Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02563 and RBAM_015390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_02563___pyrE.1.9828.seq
# -bsequence dna-align/RBAM_015390___pyrE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02563___pyrE-RBAM_015390___pyrE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02563___pyrE-RBAM_015390___pyrE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02563___pyrE
# 2: RBAM_015390___pyrE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 664
# Identity: 487/664 (73.3%)
# Similarity: 487/664 (73.3%)
# Gaps: 44/664 ( 6.6%)
# Score: 1842.5
#
#
#=======================================
BSNT_02563___ 1 ------------------TTGAAACAAATCATCGCAAAACATCTATTAGA 32
.|||||||....||||||||||||||||||.|
RBAM_015390__ 1 ATGGGAGGGCGTTCGCCGATGAAACAGGCTATCGCAAAACATCTATTACA 50
BSNT_02563___ 33 CATCCAAGCTGTATTTTTACGCCCGAACGAGCCGTTCACATGGGCAAGCG 82
|||..|||||||.||||||||||||||.||||||||.||.|||||.||||
RBAM_015390__ 51 CATTGAAGCTGTCTTTTTACGCCCGAATGAGCCGTTTACGTGGGCGAGCG 100
BSNT_02563___ 83 GCATTTTATCACCAATCTACTGTGACAACCGCCTTACGCTATCTTTCCCA 132
|||||||||||||.|||||.|||||||||||.||.||..|.||.|..|||
RBAM_015390__ 101 GCATTTTATCACCGATCTATTGTGACAACCGTCTGACATTGTCGTATCCA 150
BSNT_02563___ 133 GAGGTCAGAAACGATGTCGCCTCAGGTATCAGCAAGCTTGTCAAAGAGCA 182
.|.||.|||||.|||||.||....||..||.||||.||..|.||||||||
RBAM_015390__ 151 AAAGTGAGAAATGATGTGGCGGACGGGCTCGGCAAACTGCTGAAAGAGCA 200
BSNT_02563___ 183 TTTTCCTGAAGCTGAAATGATTGCGGGAACAGCAACTGCCGGTATTCCTC 232
|||.||.||.||.||.|||||.|||||.||.|||||.||.||.|||||.|
RBAM_015390__ 201 TTTCCCCGAGGCGGAGATGATCGCGGGCACTGCAACGGCGGGCATTCCGC 250
BSNT_02563___ 233 ATGCTGCTCTTGCGGCTGACCGTTTGAATCTT---------CCGATGTGT 273
|||||||.|||...||.| |||.| ||||||||.
RBAM_015390__ 251 ATGCTGCGCTTCTAGCAG---------ATCGTACAGGCGCGCCGATGTGC 291
BSNT_02563___ 274 TATGTGAGGAGCAAGCCGAAGACACACGGCAAAGGCAATCAGATTGAGGG 323
||.||.||.|||||.|||||..|.|||||||||||.|||||.||.||.||
RBAM_015390__ 292 TACGTCAGAAGCAAACCGAAAGCGCACGGCAAAGGAAATCAAATAGAAGG 341
BSNT_02563___ 324 AGCTGTGCAAGAAGGGCAAAAAACAGTCGTCATTGAAGACTTAATCTCCA 373
.||..|..||.|||||||||||||||||||.|||||||||||.||.||.|
RBAM_015390__ 342 CGCCATTAAAAAAGGGCAAAAAACAGTCGTGATTGAAGACTTGATTTCTA 391
BSNT_02563___ 374 CAGGAGGCAGCGTGCTTGAAGCTTGTGCAGCTTTACA---AGCGGCCG-G 419
|.||.||||||||||||||||||...||.||..|.|| ||.||.|| |
RBAM_015390__ 392 CCGGGGGCAGCGTGCTTGAAGCTGCGGCGGCCCTTCAAAGAGAGGGCGCG 441
BSNT_02563___ 420 CTGTGAAGTGCTTGGTGTCGTCTCAATCTTTACGTATGGACTTCCTAAAG 469
|||||.||.||.|||.|.||.||.|||||.||.|||||.||.||||
RBAM_015390__ 442 ----GAAGTCCTCGGCGTCATTTCCATTTTTACATACGGACTGCCGAAAG 487
BSNT_02563___ 470 CGGAGGAAGCCTTCGCAAAGGCAGAACTGCCATACTACTCATTAACTGAT 519
|..|.||||||||...|||.||.|..||.||.||.|||||.|||||.|||
RBAM_015390__ 488 CAAAAGAAGCCTTTAAAAAAGCGGGTCTTCCTTATTACTCGTTAACGGAT 537
BSNT_02563___ 520 TATGATACGCTCACAGAGGTCGCGCTTGAAAACGGAAATATTCATTCAAA 569
|||||.|||||.|..||.|||||||||||||||||||..|||||||||.|
RBAM_015390__ 538 TATGACACGCTGATTGAAGTCGCGCTTGAAAACGGAACGATTCATTCAGA 587
BSNT_02563___ 570 TGATCTAAAAAAGCTGCAAACATGGAAACAAAATCCCGAGTCAAAAGATT 619
|||..|..|.||.|||.||.||||||||||.|||||||||||||||||||
RBAM_015390__ 588 TGACATTGAGAAACTGAAATCATGGAAACAGAATCCCGAGTCAAAAGATT 637
BSNT_02563___ 620 GGTTTAAAAAATAA 633
||||||||||||||
RBAM_015390__ 638 GGTTTAAAAAATAA 651
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