Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02540 and RBAM_015220

See Amino acid alignment / Visit BSNT_02540 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:20
# Commandline: needle
#    -asequence dna-align/BSNT_02540___ylmF.1.9828.seq
#    -bsequence dna-align/RBAM_015220___ylmF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02540___ylmF-RBAM_015220___ylmF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02540___ylmF-RBAM_015220___ylmF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02540___ylmF
# 2: RBAM_015220___ylmF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 469
# Identity:     386/469 (82.3%)
# Similarity:   386/469 (82.3%)
# Gaps:          23/469 ( 4.9%)
# Score: 1612.0
# 
#
#=======================================

BSNT_02540___      1 ATGAGTATGAAGAATAAACTGAAAAACTTTTTCTCAATGGAAGATGAAGA     50
                     |||||.|||||.|||||||||||||||||||||||||||||.||.||.||
RBAM_015220__      1 ATGAGCATGAAAAATAAACTGAAAAACTTTTTCTCAATGGATGAGGAGGA     50

BSNT_02540___     51 ATACGAATATGAATATATTGAGACAGAGCGGGAATCTCAT---GAGGAGC     97
                     .|||||.||.|||||.|||||.||.||||.|||   ||||   ||.||||
RBAM_015220__     51 GTACGAGTACGAATACATTGAAACGGAGCAGGA---TCATCCGGAAGAGC     97

BSNT_02540___     98 ATG---AGCAAAAAG---AAAAGCCGGCTTATACG----GGGAATAAACC    137
                     |||   ||||.||||   ||.||||.|||  ||||    |     ||.||
RBAM_015220__     98 ATGAACAGCAGAAAGATAAACAGCCTGCT--TACGCTCAG-----AAGCC    140

BSNT_02540___    138 TTCGGGCAAACAGAATGTAGTGAGCTTGCAAAGTGTTCAGAAATCCTCTA    187
                     ...||||||.|||||.|||||.||||||||||||||||||||||||||||
RBAM_015220__    141 GCAGGGCAAGCAGAACGTAGTAAGCTTGCAAAGTGTTCAGAAATCCTCTA    190

BSNT_02540___    188 AAGTGGTGTTGAGTGAGCCGCGCGTTTATGCGGAGGCGCAGGAAATAGCC    237
                     ||||||||||||||||.|||||.||.||||||||.|||||||||||.|||
RBAM_015220__    191 AAGTGGTGTTGAGTGAACCGCGTGTATATGCGGAAGCGCAGGAAATCGCC    240

BSNT_02540___    238 GACCATTTGAAGAACCGGCGGGCAGTTGTCGTCAATCTTCAGCGGATACA    287
                     ||.|||||.||||||.|||||||.||||||||||||||.|||||.||.||
RBAM_015220__    241 GATCATTTAAAGAACAGGCGGGCGGTTGTCGTCAATCTGCAGCGCATCCA    290

BSNT_02540___    288 GCATGACCAGGCGAAGCGGATTGTTGACTTTTTAAGCGGAACCGTTTATG    337
                     ||||||.||||||||..|.||.||.||||||||||||||.|||||.||.|
RBAM_015220__    291 GCATGATCAGGCGAAAAGAATCGTCGACTTTTTAAGCGGTACCGTCTACG    340

BSNT_02540___    338 CCATCGGCGGCGATATTCAAAGAATCGGCTCAGATATTTTCCTCTGCACG    387
                     |||||||||||||.|||||.||||||||.|||||||||||.||.||||||
RBAM_015220__    341 CCATCGGCGGCGACATTCAGAGAATCGGTTCAGATATTTTTCTGTGCACG    390

BSNT_02540___    388 CCTGACAACGTAGATGTATCAGGCACAATTTCTGAGCTCATATCTGAAGA    437
                     |||||.||.||.||.||.||.|||||.|||||.|||||.|||..||||||
RBAM_015220__    391 CCTGATAATGTCGACGTTTCCGGCACGATTTCGGAGCTTATAAATGAAGA    440

BSNT_02540___    438 CGAACATCAGAGGTGGTAA    456
                     |||||||||||||||||||
RBAM_015220__    441 CGAACATCAGAGGTGGTAA    459


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