Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02535 and RBAM_015180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:20
# Commandline: needle
# -asequence dna-align/BSNT_02535___ylmB.1.9828.seq
# -bsequence dna-align/RBAM_015180___ylmB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02535___ylmB-RBAM_015180___ylmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02535___ylmB-RBAM_015180___ylmB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02535___ylmB
# 2: RBAM_015180___ylmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1416
# Identity: 946/1416 (66.8%)
# Similarity: 946/1416 (66.8%)
# Gaps: 198/1416 (14.0%)
# Score: 3306.5
#
#
#=======================================
BSNT_02535___ 1 TTGTTTTTATTAAGCCGTTTCATCACATTTGAAACGGCTTTTTTGATTTT 50
RBAM_015180__ 0 -------------------------------------------------- 0
BSNT_02535___ 51 AAAGAATAGGAGCGGATTTACATTGGAT-CAACAAATAGA----CTCTTT 95
|| ||.||.||.|| ||.||
RBAM_015180__ 1 --------------------------ATGCATCAGATTGATATGCTGTT- 23
BSNT_02535___ 96 GCAAAAAAAAGTGGAAGAACAAAAGGAGGAG--------------CTT-A 130
|||..|||.|||| ||| |
RBAM_015180__ 24 ------------------ACACCAGGCGGAGAAACGGCGGCACGACTTCA 55
BSNT_02535___ 131 TTCAGCTTGCTAAAACACTGATTTCTTATCAAACACCCGCTCCGCCTGCA 180
|.||..|||||.|||.||||||..|||.||..||.||.||.|||||.|||
RBAM_015180__ 56 TACATATTGCTGAAAGACTGATAGCTTTTCCCACTCCGGCCCCGCCAGCA 105
BSNT_02535___ 181 AGAAATA---CAGAGGGCATTCAGTCA----TGGATTGCGGGATTTTTAA 223
||||||| ||||.|.| || |||.|.||.||.|||||||
RBAM_015180__ 106 AGAAATACGGCAGAAGCC-------CAAAAGTGGGTGGCCGGCTTTTTAA 148
BSNT_02535___ 224 ATGAATTGGGATTCTCGATCGACAAATGGGATGTGTACCCTGGAGATCCC 273
|.|||..|||.|.||||.||||.|..|||||||||||.||.|.||||||.
RBAM_015180__ 149 AAGAAACGGGCTGCTCGGTCGATATGTGGGATGTGTATCCGGAAGATCCG 198
BSNT_02535___ 274 AATGTTGTCGGCAAGCTAAAGGGAACAGATTC-AGCAGATTATTATAGCC 322
|||||.|||||.....||||.||.|||||||| ||||| ..||.|.||||
RBAM_015180__ 199 AATGTAGTCGGTGTTTTAAAAGGGACAGATTCAAGCAG-GCATCAAAGCC 247
BSNT_02535___ 323 TGATTATCAATGGTCATGTAGATGTGGCAGA----GGTAAAAGAGGATGA 368
|||||.|.||.||.||..|.||||||||||| || ||..||
RBAM_015180__ 248 TGATTTTAAACGGACACATTGATGTGGCAGAAGCCGG-------GGGCGA 290
BSNT_02535___ 369 AGAATGGAAGCAC---GATCCGTTTCATCCCATTGAAAAAAACGGTCTCT 415
|||.|| |||| ||.||||||||.||.||.|.||||.||||..|..
RBAM_015180__ 291 AGACTG---GCACTCTGACCCGTTTCAGCCGATCGTAAAAGACGGCATGC 337
BSNT_02535___ 416 TAATCGGGCGAGGCGCTTCCGATATGAAGGGCGGAATGGCTTGTGTGCTG 465
|.|||||..|.|||||..|.||||||||.||.||..||||.|||||.||.
RBAM_015180__ 338 TGATCGGAAGGGGCGCCGCTGATATGAAAGGGGGGTTGGCGTGTGTTCTT 387
BSNT_02535___ 466 TTTGCTGTCAAATTAATTCGTGAAGCCGGCATTGAGCTTCCAGGTGATCT 515
||..||.|.||..|.||.|.|||.|||||||||||||||||.||.||.||
RBAM_015180__ 388 TTCTCTCTGAAGCTGATCCATGATGCCGGCATTGAGCTTCCGGGCGACCT 437
BSNT_02535___ 516 GATTCTGCAATCGGTTATTGGGGAGGAAGTTGGAGAGGCCGGCACACTTG 565
.|||.|.||.||.||.||.||.||.|||||.||.|||||.||.||.||.|
RBAM_015180__ 438 CATTGTACAGTCTGTAATCGGAGAAGAAGTCGGTGAGGCGGGGACGCTGG 487
BSNT_02535___ 566 AATGCTGCAAGAGGGGCTACCACGCTGATTTTGCAATTGTCGCGGATACG 615
||||||||||..|.|||||.|||||.||||||||..||||||||||||||
RBAM_015180__ 488 AATGCTGCAAACGCGGCTATCACGCGGATTTTGCCGTTGTCGCGGATACG 537
BSNT_02535___ 616 AGCGATATGCATATTCAAGGCCAAGGGGGTGTCATTACAGGCTGGATCGA 665
|||....|||||||||||||.||.||.||.|||||.||.||||||||.||
RBAM_015180__ 538 AGCAGCCTGCATATTCAAGGGCAGGGCGGAGTCATCACCGGCTGGATAGA 587
BSNT_02535___ 666 AATCAAAAGCAGTCAAACATTTCATGATGGAACGAGACGGAATATGATTC 715
|.|.|||||||..||||||||||||||.||.|.|||.||.||||||||||
RBAM_015180__ 588 ATTGAAAAGCAAACAAACATTTCATGACGGCATGAGGCGCAATATGATTC 637
BSNT_02535___ 716 ACGCAGGCGGAGGAACATTCGGAGCAAGCGCAATTGAAAAAATGGCAAAA 765
|.||.||||||||.|||||||||||.|||||.||.|||||||||||.|||
RBAM_015180__ 638 ATGCGGGCGGAGGCACATTCGGAGCGAGCGCCATCGAAAAAATGGCGAAA 687
BSNT_02535___ 766 ATCAT---TGCGGGGC-TCGGTGAACTTGAGCGCCACTGGTCTATTATGA 811
||||| ||| | |.||.||.||.||||||||||||.|..|.|.||
RBAM_015180__ 688 ATCATCACTGC----CTTGGGAGAGCTGGAGCGCCACTGGGCGGTAACGA 733
BSNT_02535___ 812 AAAGTTATCCCGGTTTTAAACCAGGCACAAATACGATTAACCCGGCAGTT 861
||||.||||||||||||...||.|||||.||||||||.|||||.||.||.
RBAM_015180__ 734 AAAGCTATCCCGGTTTTGCGCCCGGCACCAATACGATCAACCCTGCCGTC 783
BSNT_02535___ 862 ATAGAAGGCGGCAGACATGCGGCTTTTATAGCGGACGAATGCCGGCTGTG 911
||.||||||||.|||||.||.||.|||.|.||.||.|||||||||.|.||
RBAM_015180__ 784 ATTGAAGGCGGAAGACACGCAGCGTTTGTCGCCGATGAATGCCGGTTATG 833
BSNT_02535___ 912 GATCACAGTCCATTTTTATCCGAATGAAACCCATGACCAAGTGGCAGCGG 961
||||||.|||||.|||||||||||.|||||.||.||.||||..||.||.|
RBAM_015180__ 834 GATCACCGTCCACTTTTATCCGAACGAAACGCACGAACAAGCAGCCGCAG 883
BSNT_02535___ 962 AAATAGAGGATTACGTCAATCG----GCTGAGTGACAGTGATATTTGGCT 1007
||||.||.||.||..|.||||| || ||||||||||.|.|||||
RBAM_015180__ 884 AAATCGAAGACTATATTAATCGTGTCGC----TGACAGTGATCTGTGGCT 929
BSNT_02535___ 1008 TAGGGAAAACCGCCCTGTATTCAAGTGGGGAGGCTCATCTATGATTGAAG 1057
.|..||||||.|.||.||.|||||.||||||||.||.||.||||||||||
RBAM_015180__ 930 CAAAGAAAACAGGCCGGTGTTCAAATGGGGAGGATCTTCAATGATTGAAG 979
BSNT_02535___ 1058 ACAGAGGAGAAATTTTTCCGGCATTGGAAGTTGACCCTGGCCACCCAGGC 1107
||||||||||..|.||.|||||..|||||.|.|||||.|..||.|| |||
RBAM_015180__ 980 ACAGAGGAGAGGTGTTCCCGGCGCTGGAAATCGACCCGGATCATCC-GGC 1028
BSNT_02535___ 1108 -------GTCTTAGTGCTAACTGCCTCTCA-TCAG-----AAAGTGAAAC 1144
|||||.| ||||.||.|| |||| ||| ||||
RBAM_015180__ 1029 AGTTTCTGTCTTGG------CTGCATCACACTCAGCCGTCAAA---AAAC 1069
BSNT_02535___ 1145 GGGAGTGTCCAATTATTGACGTTTCTCAATCAGTTACAGATGGCGGATGG 1194
.|||| ||..|.|||||.|||||.|||.|.||.||.||.||.||.|||
RBAM_015180__ 1070 AGGAG---CCCGTCATTGATGTTTCCCAAACCGTAACTGACGGAGGGTGG 1116
BSNT_02535___ 1195 CTGTATGATGCCGGTATTCCATGCGTAATATACGGTCCTGGAGATCTGCA 1244
||.|||.|||||||.|||||..||||.|||||||||||.||.|||.|..|
RBAM_015180__ 1117 CTTTATCATGCCGGGATTCCGAGCGTCATATACGGTCCCGGCGATTTAAA 1166
BSNT_02535___ 1245 CAATGCACACTCTGTGAACGAGAAGGTATCGATTGAGCAGCTAGTAGAGT 1294
.||.||.|||||.||.||||||.|.||.||..||||..||||..|.||.|
RBAM_015180__ 1167 AAACGCCCACTCCGTAAACGAGGAAGTGTCTGTTGATGAGCTTATGGACT 1216
BSNT_02535___ 1295 ATACAAAAATTATACTCGA-TTTTATCATCAGCTGGTGCAGCCGGAAAAA 1343
||||.|||||.||.|| || .||||||.||.|||||||||||||.|||||
RBAM_015180__ 1217 ATACGAAAATCATGCT-GAGATTTATCCTCGGCTGGTGCAGCCGCAAAAA 1265
BSNT_02535___ 1344 AGA----ACAATGA-- 1353
||| .|.|||.
RBAM_015180__ 1266 AGATTGCCCGATGTGA 1281
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