Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02535 and RBAM_015180

See Amino acid alignment / Visit BSNT_02535 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:20
# Commandline: needle
#    -asequence dna-align/BSNT_02535___ylmB.1.9828.seq
#    -bsequence dna-align/RBAM_015180___ylmB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02535___ylmB-RBAM_015180___ylmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02535___ylmB-RBAM_015180___ylmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02535___ylmB
# 2: RBAM_015180___ylmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1416
# Identity:     946/1416 (66.8%)
# Similarity:   946/1416 (66.8%)
# Gaps:         198/1416 (14.0%)
# Score: 3306.5
# 
#
#=======================================

BSNT_02535___      1 TTGTTTTTATTAAGCCGTTTCATCACATTTGAAACGGCTTTTTTGATTTT     50
                                                                       
RBAM_015180__      0 --------------------------------------------------      0

BSNT_02535___     51 AAAGAATAGGAGCGGATTTACATTGGAT-CAACAAATAGA----CTCTTT     95
                                               || ||.||.||.||    ||.|| 
RBAM_015180__      1 --------------------------ATGCATCAGATTGATATGCTGTT-     23

BSNT_02535___     96 GCAAAAAAAAGTGGAAGAACAAAAGGAGGAG--------------CTT-A    130
                                       |||..|||.||||              ||| |
RBAM_015180__     24 ------------------ACACCAGGCGGAGAAACGGCGGCACGACTTCA     55

BSNT_02535___    131 TTCAGCTTGCTAAAACACTGATTTCTTATCAAACACCCGCTCCGCCTGCA    180
                     |.||..|||||.|||.||||||..|||.||..||.||.||.|||||.|||
RBAM_015180__     56 TACATATTGCTGAAAGACTGATAGCTTTTCCCACTCCGGCCCCGCCAGCA    105

BSNT_02535___    181 AGAAATA---CAGAGGGCATTCAGTCA----TGGATTGCGGGATTTTTAA    223
                     |||||||   ||||.|.|       ||    |||.|.||.||.|||||||
RBAM_015180__    106 AGAAATACGGCAGAAGCC-------CAAAAGTGGGTGGCCGGCTTTTTAA    148

BSNT_02535___    224 ATGAATTGGGATTCTCGATCGACAAATGGGATGTGTACCCTGGAGATCCC    273
                     |.|||..|||.|.||||.||||.|..|||||||||||.||.|.||||||.
RBAM_015180__    149 AAGAAACGGGCTGCTCGGTCGATATGTGGGATGTGTATCCGGAAGATCCG    198

BSNT_02535___    274 AATGTTGTCGGCAAGCTAAAGGGAACAGATTC-AGCAGATTATTATAGCC    322
                     |||||.|||||.....||||.||.|||||||| ||||| ..||.|.||||
RBAM_015180__    199 AATGTAGTCGGTGTTTTAAAAGGGACAGATTCAAGCAG-GCATCAAAGCC    247

BSNT_02535___    323 TGATTATCAATGGTCATGTAGATGTGGCAGA----GGTAAAAGAGGATGA    368
                     |||||.|.||.||.||..|.|||||||||||    ||       ||..||
RBAM_015180__    248 TGATTTTAAACGGACACATTGATGTGGCAGAAGCCGG-------GGGCGA    290

BSNT_02535___    369 AGAATGGAAGCAC---GATCCGTTTCATCCCATTGAAAAAAACGGTCTCT    415
                     |||.||   ||||   ||.||||||||.||.||.|.||||.||||..|..
RBAM_015180__    291 AGACTG---GCACTCTGACCCGTTTCAGCCGATCGTAAAAGACGGCATGC    337

BSNT_02535___    416 TAATCGGGCGAGGCGCTTCCGATATGAAGGGCGGAATGGCTTGTGTGCTG    465
                     |.|||||..|.|||||..|.||||||||.||.||..||||.|||||.||.
RBAM_015180__    338 TGATCGGAAGGGGCGCCGCTGATATGAAAGGGGGGTTGGCGTGTGTTCTT    387

BSNT_02535___    466 TTTGCTGTCAAATTAATTCGTGAAGCCGGCATTGAGCTTCCAGGTGATCT    515
                     ||..||.|.||..|.||.|.|||.|||||||||||||||||.||.||.||
RBAM_015180__    388 TTCTCTCTGAAGCTGATCCATGATGCCGGCATTGAGCTTCCGGGCGACCT    437

BSNT_02535___    516 GATTCTGCAATCGGTTATTGGGGAGGAAGTTGGAGAGGCCGGCACACTTG    565
                     .|||.|.||.||.||.||.||.||.|||||.||.|||||.||.||.||.|
RBAM_015180__    438 CATTGTACAGTCTGTAATCGGAGAAGAAGTCGGTGAGGCGGGGACGCTGG    487

BSNT_02535___    566 AATGCTGCAAGAGGGGCTACCACGCTGATTTTGCAATTGTCGCGGATACG    615
                     ||||||||||..|.|||||.|||||.||||||||..||||||||||||||
RBAM_015180__    488 AATGCTGCAAACGCGGCTATCACGCGGATTTTGCCGTTGTCGCGGATACG    537

BSNT_02535___    616 AGCGATATGCATATTCAAGGCCAAGGGGGTGTCATTACAGGCTGGATCGA    665
                     |||....|||||||||||||.||.||.||.|||||.||.||||||||.||
RBAM_015180__    538 AGCAGCCTGCATATTCAAGGGCAGGGCGGAGTCATCACCGGCTGGATAGA    587

BSNT_02535___    666 AATCAAAAGCAGTCAAACATTTCATGATGGAACGAGACGGAATATGATTC    715
                     |.|.|||||||..||||||||||||||.||.|.|||.||.||||||||||
RBAM_015180__    588 ATTGAAAAGCAAACAAACATTTCATGACGGCATGAGGCGCAATATGATTC    637

BSNT_02535___    716 ACGCAGGCGGAGGAACATTCGGAGCAAGCGCAATTGAAAAAATGGCAAAA    765
                     |.||.||||||||.|||||||||||.|||||.||.|||||||||||.|||
RBAM_015180__    638 ATGCGGGCGGAGGCACATTCGGAGCGAGCGCCATCGAAAAAATGGCGAAA    687

BSNT_02535___    766 ATCAT---TGCGGGGC-TCGGTGAACTTGAGCGCCACTGGTCTATTATGA    811
                     |||||   |||    | |.||.||.||.||||||||||||.|..|.|.||
RBAM_015180__    688 ATCATCACTGC----CTTGGGAGAGCTGGAGCGCCACTGGGCGGTAACGA    733

BSNT_02535___    812 AAAGTTATCCCGGTTTTAAACCAGGCACAAATACGATTAACCCGGCAGTT    861
                     ||||.||||||||||||...||.|||||.||||||||.|||||.||.||.
RBAM_015180__    734 AAAGCTATCCCGGTTTTGCGCCCGGCACCAATACGATCAACCCTGCCGTC    783

BSNT_02535___    862 ATAGAAGGCGGCAGACATGCGGCTTTTATAGCGGACGAATGCCGGCTGTG    911
                     ||.||||||||.|||||.||.||.|||.|.||.||.|||||||||.|.||
RBAM_015180__    784 ATTGAAGGCGGAAGACACGCAGCGTTTGTCGCCGATGAATGCCGGTTATG    833

BSNT_02535___    912 GATCACAGTCCATTTTTATCCGAATGAAACCCATGACCAAGTGGCAGCGG    961
                     ||||||.|||||.|||||||||||.|||||.||.||.||||..||.||.|
RBAM_015180__    834 GATCACCGTCCACTTTTATCCGAACGAAACGCACGAACAAGCAGCCGCAG    883

BSNT_02535___    962 AAATAGAGGATTACGTCAATCG----GCTGAGTGACAGTGATATTTGGCT   1007
                     ||||.||.||.||..|.|||||    ||    ||||||||||.|.|||||
RBAM_015180__    884 AAATCGAAGACTATATTAATCGTGTCGC----TGACAGTGATCTGTGGCT    929

BSNT_02535___   1008 TAGGGAAAACCGCCCTGTATTCAAGTGGGGAGGCTCATCTATGATTGAAG   1057
                     .|..||||||.|.||.||.|||||.||||||||.||.||.||||||||||
RBAM_015180__    930 CAAAGAAAACAGGCCGGTGTTCAAATGGGGAGGATCTTCAATGATTGAAG    979

BSNT_02535___   1058 ACAGAGGAGAAATTTTTCCGGCATTGGAAGTTGACCCTGGCCACCCAGGC   1107
                     ||||||||||..|.||.|||||..|||||.|.|||||.|..||.|| |||
RBAM_015180__    980 ACAGAGGAGAGGTGTTCCCGGCGCTGGAAATCGACCCGGATCATCC-GGC   1028

BSNT_02535___   1108 -------GTCTTAGTGCTAACTGCCTCTCA-TCAG-----AAAGTGAAAC   1144
                            |||||.|      ||||.||.|| ||||     |||   ||||
RBAM_015180__   1029 AGTTTCTGTCTTGG------CTGCATCACACTCAGCCGTCAAA---AAAC   1069

BSNT_02535___   1145 GGGAGTGTCCAATTATTGACGTTTCTCAATCAGTTACAGATGGCGGATGG   1194
                     .||||   ||..|.|||||.|||||.|||.|.||.||.||.||.||.|||
RBAM_015180__   1070 AGGAG---CCCGTCATTGATGTTTCCCAAACCGTAACTGACGGAGGGTGG   1116

BSNT_02535___   1195 CTGTATGATGCCGGTATTCCATGCGTAATATACGGTCCTGGAGATCTGCA   1244
                     ||.|||.|||||||.|||||..||||.|||||||||||.||.|||.|..|
RBAM_015180__   1117 CTTTATCATGCCGGGATTCCGAGCGTCATATACGGTCCCGGCGATTTAAA   1166

BSNT_02535___   1245 CAATGCACACTCTGTGAACGAGAAGGTATCGATTGAGCAGCTAGTAGAGT   1294
                     .||.||.|||||.||.||||||.|.||.||..||||..||||..|.||.|
RBAM_015180__   1167 AAACGCCCACTCCGTAAACGAGGAAGTGTCTGTTGATGAGCTTATGGACT   1216

BSNT_02535___   1295 ATACAAAAATTATACTCGA-TTTTATCATCAGCTGGTGCAGCCGGAAAAA   1343
                     ||||.|||||.||.|| || .||||||.||.|||||||||||||.|||||
RBAM_015180__   1217 ATACGAAAATCATGCT-GAGATTTATCCTCGGCTGGTGCAGCCGCAAAAA   1265

BSNT_02535___   1344 AGA----ACAATGA--   1353
                     |||    .|.|||.  
RBAM_015180__   1266 AGATTGCCCGATGTGA   1281


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