Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02533 and RBAM_015170

See Amino acid alignment / Visit BSNT_02533 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:19
# Commandline: needle
#    -asequence dna-align/BSNT_02533___ylmA.1.9828.seq
#    -bsequence dna-align/RBAM_015170___ylmA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02533___ylmA-RBAM_015170___ylmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02533___ylmA-RBAM_015170___ylmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02533___ylmA
# 2: RBAM_015170___ylmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 815
# Identity:     603/815 (74.0%)
# Similarity:   603/815 (74.0%)
# Gaps:          37/815 ( 4.5%)
# Score: 2226.0
# 
#
#=======================================

BSNT_02533___      1 ATGATTTTGCAGCTTGACAATGTCTCACTAAAACGGAATGGGAAATGGAT     50
                     ||||||||.|||||.||||.|||.|||.|||||.|.||.|||||||||||
RBAM_015170__      1 ATGATTTTACAGCTGGACAGTGTGTCATTAAAAAGAAACGGGAAATGGAT     50

BSNT_02533___     51 ACTGAGAGATATTCATTGGAAGGTGGAAGAAAAGGAAAATTGGGTGCTTT    100
                     ..|||.|||||||.|.|||...||.||..||||.||||||||||||||.|
RBAM_015170__     51 TTTGAAAGATATTAACTGGCGCGTCGAGAAAAACGAAAATTGGGTGCTGT    100

BSNT_02533___    101 ACGGCCTAAATGGCGCCGGGAAGACGGCGCTGTTAAATATGCTTTGCTCA    150
                     ||||..||||.||.|||||.||.|||||..||.|.||||||.|.|||||.
RBAM_015170__    101 ACGGATTAAACGGAGCCGGAAAAACGGCTTTGCTGAATATGTTATGCTCT    150

BSNT_02533___    151 TATTATTTTCCAACATCAGGCGAGATGCAGGTGCTTGGCCATGAATTTGG    200
                     |||||.||.||.||.|||||.||||||||||||||.||||||.||||.||
RBAM_015170__    151 TATTACTTCCCCACTTCAGGAGAGATGCAGGTGCTCGGCCATCAATTCGG    200

BSNT_02533___    201 CAAAACAGAGCTTGGGGAAAAGCTCAGACGTAAAATTGGCCTCGTCTCAG    250
                     ||||||||||||.||.||.|.|||||||.|.|||||.|||||.||.||.|
RBAM_015170__    201 CAAAACAGAGCTCGGTGACAGGCTCAGAAGGAAAATCGGCCTTGTTTCGG    250

BSNT_02533___    251 CAGCTCTTCAGCAAAAATTGTATCCGGCAGATTCAGCCTTTGAAATTGCT    300
                     |||.|||||||||.|||||.|||.|.||.||.||.||.||||||||.||.
RBAM_015170__    251 CAGGTCTTCAGCACAAATTATATGCCGCGGACTCCGCTTTTGAAATCGCC    300

BSNT_02533___    301 TTGAGCGGAGCTTACGCTTCGATTGGGTTATATGAAACGCCAAGTAAGGA    350
                     .|.|||||.||.|||||.||.||.|||.|.||.|||||.||.|||.||.|
RBAM_015170__    301 CTCAGCGGCGCGTACGCCTCAATCGGGCTGTACGAAACTCCGAGTGAGCA    350

BSNT_02533___    351 AACCAGGGAAAAAGCGATTGGT-TTGTTAGAGGACTTGGGAGCAATTGAA    399
                     ....||||||||||||||.||| ||.|.| ||||.|||||.||.||.|..
RBAM_015170__    351 GGTAAGGGAAAAAGCGATCGGTCTTCTGA-AGGATTTGGGCGCCATCGGT    399

BSNT_02533___    400 TATGCCGATCGTCGCTATGAAACCCTTTCTCAAGGGGAAAAACAAAGAGC    449
                     ||.|||||..|.||.||||||||..|.||.||||||||||.|||||||||
RBAM_015170__    400 TACGCCGACAGACGGTATGAAACATTATCACAAGGGGAAAGACAAAGAGC    449

BSNT_02533___    450 GTTGATTGCTAGAGCACTAATGGCCGATCCGGAGTTGCTGATACTGGATG    499
                     |.|||||||..|.||.||.|||||.||||||||..|||||||..||||.|
RBAM_015170__    450 GCTGATTGCGCGGGCGCTTATGGCTGATCCGGAACTGCTGATTTTGGACG    499

BSNT_02533___    500 AACCAGTCACAGGGCTGGATTTTATTGCCCGGGAAAAGTTGTTAGATACG    549
                     ||||.||.||.||.||.||||||||.||..||||..||.||.|.||.|||
RBAM_015170__    500 AACCCGTGACGGGTCTTGATTTTATGGCAAGGGAGCAGCTGCTGGACACG    549

BSNT_02533___    550 ATTACATACATTGCAAACAAAGAAAATGCACCATCTATCCTTTATGTGAC    599
                     |||||.|..||.||..|.|||||||||||||||||.|||||||||||.||
RBAM_015170__    550 ATTACGTCGATCGCCGAAAAAGAAAATGCACCATCCATCCTTTATGTCAC    599

BSNT_02533___    600 TCATCATGCTGAAGAAATTCTGCCTGTCTTTGATAAAGCCCTTTTATTAA    649
                     .|||||.|||||||||||||||||.||.||||||.|.||.||..|.||||
RBAM_015170__    600 CCATCACGCTGAAGAAATTCTGCCGGTATTTGATCAGGCGCTGCTTTTAA    649

BSNT_02533___    650 AACAGGGAGAGGTCTTTGGATCCGGAGAAATAAAGGAAATGCTTACTGAT    699
                     |||||||.|||||.|..|..|||||..||||.|.|||.||||||.|||| 
RBAM_015170__    650 AACAGGGCGAGGTGTACGCCTCCGGGAAAATCAGGGACATGCTTTCTGA-    698

BSNT_02533___    700 CAAG-TACTTTCCGCTTTTTTTGATACGCCAATCCATGTATTATGGAATC    748
                     |.|| ..|||.|.||.|||||.||||.|||..||.||||.||||||||..
RBAM_015170__    699 CGAGCGGCTTACAGCGTTTTTCGATATGCCTGTCAATGTCTTATGGAACA    748

BSNT_02533___    749 AGGATCGGCCGTTTTTAAC--------AAGAGCTGAGC------CG----    780
                     |.|..||.|||||||||||        |||||    ||      ||    
RBAM_015170__    749 ATGGCCGCCCGTTTTTAACACGTGCAAAAGAG----GCATCATACGTAAA    794

BSNT_02533___    781 ATAACGAATGCCTGA    795
                     ||||           
RBAM_015170__    795 ATAA-----------    798


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