Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02507 and RBAM_015020
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:16
# Commandline: needle
# -asequence dna-align/BSNT_02507___pbpB.1.9828.seq
# -bsequence dna-align/RBAM_015020___pbpB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02507___pbpB-RBAM_015020___pbpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02507___pbpB-RBAM_015020___pbpB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02507___pbpB
# 2: RBAM_015020___pbpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2186
# Identity: 1666/2186 (76.2%)
# Similarity: 1666/2186 (76.2%)
# Gaps: 76/2186 ( 3.5%)
# Score: 6264.0
#
#
#=======================================
BSNT_02507___ 1 ATGATTCAAATGCCAAAAAAGAATAAATTTATGAATAGAGGAGCAGCGAT 50
|||||.|||||.|||||.||||||||.||||||||||||||
RBAM_015020__ 1 ---------ATGCCGAAAAAAAATAAGTTTATGAACAGAGGAGCAGCGAT 41
BSNT_02507___ 51 TCTAAGTATTTGTTTCGCTCTCTTTTTCTTTGTCATCCTGGGGAGAATGG 100
.||.||||||||||||||||||||||||||||||||.||.||||||||||
RBAM_015020__ 42 ACTCAGTATTTGTTTCGCTCTCTTTTTCTTTGTCATTCTCGGGAGAATGG 91
BSNT_02507___ 101 CATATATTCAAATAACCGGAAAAGCGAACGGCGAAGTGCTTGCGACAAAA 150
|.||.||||||.|||||||.|||||.|||||.|.||..|||||.||||||
RBAM_015020__ 92 CGTACATTCAATTAACCGGTAAAGCAAACGGTGTAGAACTTGCAACAAAA 141
BSNT_02507___ 151 GCGACAGAGCAGCATGAAAAGAAACGGACCATCGAAGCGAGCCGCGGCTC 200
|||||.||||||||.|||||.||.|||||.||.|||||||||||||||||
RBAM_015020__ 142 GCGACCGAGCAGCACGAAAAAAAGCGGACGATAGAAGCGAGCCGCGGCTC 191
BSNT_02507___ 201 GATTTTAGACCGAAAAGGAAAAGTCATTGCAGAGGACACAGCGACGTATA 250
.|||.|.|||||.||.||.|||||..|||||||||||||.|||||.||||
RBAM_015020__ 192 TATTCTTGACCGGAACGGCAAAGTGCTTGCAGAGGACACGGCGACATATA 241
BSNT_02507___ 251 AACTGATTGCGATTCTCGATAAAAAAATGACCACTGATGTCAAGCATCCT 300
||||.|||||..|.||.||||||||||||||.|.||||...|||||||||
RBAM_015020__ 242 AACTCATTGCCGTGCTTGATAAAAAAATGACGAGTGATCCGAAGCATCCT 291
BSNT_02507___ 301 CAGCATGTTGTAAACAAAGAAAAAACGGCGGAAGCATTGTCTAAAGTGAT 350
||||||||...|.|||||||.||||||||||||..|.||.|.|..||.||
RBAM_015020__ 292 CAGCATGTCAAAGACAAAGAGAAAACGGCGGAAAAACTGGCGACCGTTAT 341
BSNT_02507___ 351 -AAACTTG-GACAAGGCCGACATCCTTGATATCTTAAATAAAGAT---GC 395
||.|||| .|.||| |||.||.||.||.||||||||.|..||| ||
RBAM_015020__ 342 CAATCTTGATAAAAG--CGAGATTCTGGACATCTTAAACAGGGATGGCGC 389
BSNT_02507___ 396 AAAACAAGTCGAGTTTGGCTCAGCTGGCCGGGATATTACGTATTCACAAA 445
.||.||.||.||.||.||.|||||.|||||.|||||..|.|||.|..|||
RBAM_015020__ 390 GAAGCAGGTGGAATTCGGTTCAGCCGGCCGCGATATCTCTTATGCGAAAA 439
BSNT_02507___ 446 AGCAAAAAATTGAAAAAATGAAACTCCCGGGCATTTCATTTTTGCGGGAT 495
|.|||||.||.|||||||||||.||.|||||.|||||.||.||..|.|||
RBAM_015020__ 440 AACAAAAGATCGAAAAAATGAATCTTCCGGGTATTTCTTTCTTAAGAGAT 489
BSNT_02507___ 496 ACAAAACGCTACTATCCAAATG--GTATTTTCGCATCCAATTTAATCGGC 543
||.||.|||||||||||.||.| |||||||.| ||.|||.|..|||||
RBAM_015020__ 490 ACGAAGCGCTACTATCCGAACGGTGTATTTTTG--TCAAATGTTCTCGGC 537
BSNT_02507___ 544 TATGCCGAGGTTGATCAAGACACAAATGAAATTTCCGGCGCGATGGGGTT 593
||||||||.||..||.||.|.|||||.||.||....|||.|..|.|||.|
RBAM_015020__ 538 TATGCCGATGTGAATGAAAAAACAAACGAGATACAAGGCTCTTTAGGGCT 587
BSNT_02507___ 594 AGAAAAAGTGCTGGATAAGTATTTGAAGGAGCGCGACGGATATGTGACAT 643
.||||||.|.|||.|.||.|||.|||.|||.||||||||||..||.||.|
RBAM_015020__ 588 TGAAAAAATACTGAACAACTATCTGACGGAACGCGACGGATCCGTCACTT 637
BSNT_02507___ 644 ATGAAAGCGACAAATCCGGCTGGGAGCTCCCGAACAGCAAAAATAAAATT 693
|.|||||.||.||||||||||||.|.||.||||||||||||.|.|||||.
RBAM_015020__ 638 ACGAAAGTGATAAATCCGGCTGGAAACTTCCGAACAGCAAAGAAAAAATC 687
BSNT_02507___ 694 ACAGCGCCAAAAAATGGTGACAATGTATATTTAACCATTGACCAGAATAT 743
||.||.||.|||||.||||||||||||||||||||||||||.|||||.||
RBAM_015020__ 688 ACCGCACCTAAAAACGGTGACAATGTATATTTAACCATTGATCAGAAAAT 737
BSNT_02507___ 744 TCAAACCTTTTTGGAAGACAGTATGACAAAAGTGGCGCAAAAGTATAATC 793
||||||||||||.||||||||.|||||.|||||.|||.||||.|||||.|
RBAM_015020__ 738 TCAAACCTTTTTAGAAGACAGCATGACGAAAGTAGCGGAAAAATATAAAC 787
BSNT_02507___ 794 CGAAAAAAATCATGGCCGCAGTCGTTGATCCGAAAACGGGCAAAGTCCTT 843
||||||||||.|||||.||.|||||.||.||||||||.||||||||.|||
RBAM_015020__ 788 CGAAAAAAATTATGGCGGCTGTCGTAGAACCGAAAACAGGCAAAGTGCTT 837
BSNT_02507___ 844 GCCATGGGACAGCGCCCAAGCTTTGATCCGAACAAGCGCGATGTGACAAA 893
||.|||||.||.||.||.||.|||||.|||||.|...|..|.||.||.||
RBAM_015020__ 838 GCGATGGGGCAACGTCCGAGTTTTGACCCGAATATCAGAAACGTCACCAA 887
BSNT_02507___ 894 CTACTATAATGATTTGATTTCATATGCGTATGAGCCCGGATCAACGATGA 943
.||.||.||.||.||..|.||.||.||.|||||.||.||.||||||||||
RBAM_015020__ 888 TTATTACAACGACTTAGTGTCGTACGCATATGAACCGGGTTCAACGATGA 937
BSNT_02507___ 944 AGATCTTTACACTCGCTGCTGCGATGCAGGAAAACGTGTTTAATGCGAAC 993
||||||||||.||.|||||.|||||.||||||||.||||||...||.|||
RBAM_015020__ 938 AGATCTTTACGCTTGCTGCGGCGATTCAGGAAAATGTGTTTTCCGCAAAC 987
BSNT_02507___ 994 GAAAAATATAAATCAGGGACATTTGAAGTTGGCGGAGCACCTGTCAGGGA 1043
||.||||||||||||||.||||.|.||||.||.||.|.||||||
RBAM_015020__ 988 GAGAAATATAAATCAGGAACATATAAAGTGGGAGGCGGACCTGT------ 1031
BSNT_02507___ 1044 CCATAATAGA--GGAA--------TAGGCTGGGGACCGACAACCTATCAT 1083
||| ||| |||| ..||||||||...|||||.||..|||
RBAM_015020__ 1032 ---TAA-AGATTGGAACGATGGCGCCGGCTGGGGCATGACAAGCTTCCAT 1077
BSNT_02507___ 1084 GACGGCGTTCTAAGATCGTCGAATGTCGCTTTTGCGAAACTGGCGAAAGA 1133
||||||.||.|.||.||.||.|||||.||||||||.||||||||.||.||
RBAM_015020__ 1078 GACGGCCTTATGAGGTCATCCAATGTTGCTTTTGCCAAACTGGCCAACGA 1127
BSNT_02507___ 1134 AAAGCTGGGATATGACCGCCTCAATCAATATTTGCACAAATTCAATTTTT 1183
|||.|||||.|.||||||..|.|||.|.||..|||||||||||....|.|
RBAM_015020__ 1128 AAAACTGGGGTTTGACCGGTTTAATGAGTACCTGCACAAATTCGGGCTCT 1177
BSNT_02507___ 1184 ACCAGAAAACAGGTATTGATTTGCCTGGAGAAGTCTCCAGCAAAATCAAC 1233
|.||.||||||||..|||||.||||.||.|||||.||.||.|||||.|||
RBAM_015020__ 1178 ATCAAAAAACAGGGGTTGATCTGCCCGGTGAAGTATCAAGTAAAATTAAC 1227
BSNT_02507___ 1234 TTTAAATATGAATTTGATAAGGCGTCAACTGCATATGGCCAAGCGTCTGC 1283
|..||||||||.|||||.||.|||||.||.||.||.||||||||.||.||
RBAM_015020__ 1228 TACAAATATGATTTTGACAAAGCGTCTACGGCTTACGGCCAAGCATCGGC 1277
BSNT_02507___ 1284 GGTCACACCAATTCAGCAGATTCAGGCCGCAACGGCAATTGCAAATGACG 1333
|.|.||.||.||.||||||.|||||||||..|||||.|||||.|||.|||
RBAM_015020__ 1278 GATAACGCCGATCCAGCAGCTTCAGGCCGTCACGGCGATTGCCAATAACG 1327
BSNT_02507___ 1334 GCAAAATGATGAAACCTTATGTGATTGACCATATCGTTGATCCCGATAAA 1383
|||||||||||||||||||.||.|||||.|||||.||.||||||||| |.
RBAM_015020__ 1328 GCAAAATGATGAAACCTTACGTCATTGATCATATTGTCGATCCCGAT-AC 1376
BSNT_02507___ 1384 GATAAAACTATTTA-----TCAAAATAAGCCGGAATCAGCCGGAACCCCA 1428
||.||||.|..|.| .||||| ||.||...||..||.||.||.
RBAM_015020__ 1377 GAAAAAAGTCGTCAAGCAGACAAAA----CCAGAGCAAGTAGGCACGCCG 1422
BSNT_02507___ 1429 ATTTCTGCAAGC----ACAGCGAAAAAGGTGCGGGATATATTGGGAGAAG 1474
||||| ||| ||.||||||||.||.|||.|..|..|.|||||||
RBAM_015020__ 1423 ATTTC----AGCCGATACGGCGAAAAAAGTCCGGAACCTGCTCGGAGAAG 1468
BSNT_02507___ 1475 TTGTTACGTCGAAAATCGGAACAGGGCAAGCATATAAAATCGAAGGTTTT 1524
|.||.|||||..|.||||||||.||..||.|.||||||||.|||||.|||
RBAM_015020__ 1469 TCGTGACGTCAGACATCGGAACGGGAAAACCTTATAAAATTGAAGGATTT 1518
BSNT_02507___ 1525 GATGTTGCCGGGAAAACAGGTACTGCGCAAATAGCCGGTAAAGGCGGATA 1574
||.||.||.||.|||||.||.||.||||||||.|||||.|..||||||||
RBAM_015020__ 1519 GACGTCGCGGGTAAAACGGGAACCGCGCAAATTGCCGGGACGGGCGGATA 1568
BSNT_02507___ 1575 TTT-AGACGGCACAGA-TAACTATATCTTTTCTTTTATGGGTATGGCGCC 1622
||| ||| ||.|| || .||||||.|.|||||.||.|||||.||||||||
RBAM_015020__ 1569 TTTAAGA-GGAAC-GAGCAACTATGTGTTTTCATTCATGGGCATGGCGCC 1616
BSNT_02507___ 1623 AAAAGATGATCCTGAGCTTTTAATTTATGTTGCTGTACAGCAGCCGCAAC 1672
.|||.||||||||.||||..|.||.|||||.||.||.||||||||||||.
RBAM_015020__ 1617 GAAAAATGATCCTAAGCTCGTCATCTATGTAGCCGTGCAGCAGCCGCAAT 1666
BSNT_02507___ 1673 TAAAAGCAGGACAAAGCAGTTCAGATCCAGTATCAGAAATCTTCAATCCA 1722
|||||||.||.||||||||.||.|||||.||..|.||||||||.||.||.
RBAM_015020__ 1667 TAAAAGCGGGGCAAAGCAGCTCTGATCCTGTCGCGGAAATCTTTAACCCG 1716
BSNT_02507___ 1723 ACAATGAAAAATAGCCTGCACTACCTAAACATCGAACCAACTGAAAAATC 1772
||.||||||||.|||||.||||||.|.||.||||||||.||.||||||.|
RBAM_015020__ 1717 ACGATGAAAAACAGCCTCCACTACATGAATATCGAACCGACGGAAAAAAC 1766
BSNT_02507___ 1773 TGACTCAGATAAGGAAGAAAC-AAAAGCGCAGACAATGCCTGATTTAACA 1821
.||.||.|.|.|||||||||| |||||| ||.|..||||||||..|.|||
RBAM_015020__ 1767 AGATTCCGGTCAGGAAGAAACGAAAAGC-CAAAAGATGCCTGACCTGACA 1815
BSNT_02507___ 1822 GATCAAACGGT----AGCTGCTGCTCAAAAGAAAGCAAAAGAGGAGAATC 1867
|||.|.||||| ||| |||.|.|||.||||.|||.|.||..|||
RBAM_015020__ 1816 GATAAGACGGTCAAGAGC----GCTGAGAAGGAAGCGAAAAATGAACATC 1861
BSNT_02507___ 1868 TCACACCAATTGTCATCGGCAGTGATGTCGCTGTAAAAGAACAGTATCCG 1917
|||||||.||||||||||||||.|||||.||.||||||||.|||||||||
RBAM_015020__ 1862 TCACACCGATTGTCATCGGCAGCGATGTTGCCGTAAAAGAGCAGTATCCG 1911
BSNT_02507___ 1918 AAAG-CGGATGAGGAAGTTCTCACCAATCAAAAGGTCTTCCTGAAAACGG 1966
|.|| |||| ||.||.||..||||||||||.||..|||||.|.|||||.|
RBAM_015020__ 1912 ACAGCCGGA-GAAGATGTGATCACCAATCAGAAAATCTTCTTAAAAACAG 1960
BSNT_02507___ 1967 GCGGCAAAATCAAAATGCCTGATATGACAGGCTGGTCGAGAAGAGAGGTT 2016
.|||.||.||.|..|||||.||||||.|.||.|||||||||.|.||.||.
RBAM_015020__ 1961 ACGGAAAGATGACGATGCCGGATATGTCCGGATGGTCGAGACGGGAAGTG 2010
BSNT_02507___ 2017 CTGCAGTACGGCGAGCTCGCGGGAATTCATATTGAAGTAAGCGGACAAGG 2066
||.||.|.|.||.|..|..|.||.|||||.||.||.||.|||||..||||
RBAM_015020__ 2011 CTTCAATTCAGCAAAGTATCAGGCATTCACATCGATGTGAGCGGTGAAGG 2060
BSNT_02507___ 2067 CTACGCTGTC-AGCCAAAGTGTTAAGAAAGACAAAGAAATCAAAGACAAA 2115
.|||||| || |||||||||||.||.||||.|||||||.|.|||||.||.
RBAM_015020__ 2061 TTACGCT-TCAAGCCAAAGTGTGAAAAAAGGCAAAGAACTGAAAGAAAAT 2109
BSNT_02507___ 2116 ACCGTAATCAAGGTTAAGTTTAAAAATCCTGATTAA 2151
|||||.||||||||.||.||||||||||||||||||
RBAM_015020__ 2110 ACCGTGATCAAGGTGAAATTTAAAAATCCTGATTAA 2145
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