Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02502 and RBAM_014970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:16
# Commandline: needle
# -asequence dna-align/BSNT_02502___ylbQ.1.9828.seq
# -bsequence dna-align/RBAM_014970___ylbQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02502___ylbQ-RBAM_014970___ylbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02502___ylbQ-RBAM_014970___ylbQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02502___ylbQ
# 2: RBAM_014970___ylbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 958
# Identity: 609/958 (63.6%)
# Similarity: 609/958 (63.6%)
# Gaps: 137/958 (14.3%)
# Score: 1739.0
#
#
#=======================================
BSNT_02502___ 1 ATGAAAATTGGAATTATCGGCGGAGGCTCCGTCGGTCTTTTATGCGCCTA 50
.|||||||.||||||||||||||.||..|.||.||.||||||||.||.||
RBAM_014970__ 1 GTGAAAATCGGAATTATCGGCGGCGGAGCAGTAGGCCTTTTATGTGCTTA 50
BSNT_02502___ 51 TTATTT---GTCACTTTATCACGACGTGACTGTTGTGACGAGGCGGCAAG 97
.||.|| |||.|...||| |.||.||.||..|.|||.|||||...|
RBAM_014970__ 51 CTACTTATCGTCCCGCCATC---AGGTAACGGTCATTACGCGGCGGACGG 97
BSNT_02502___ 98 AACAGGCTGCGGCCATTCGGTCTGAAGGAATCCGGCTTTATAAAGGCGGG 147
|.|||||||..||.|||...||.|..||.||.|||||||..||||.|||.
RBAM_014970__ 98 AGCAGGCTGATGCGATTAACTCAGGCGGTATACGGCTTTTGAAAGACGGA 147
BSNT_02502___ 148 GAGGAATTCAGGGCTGATTGCAGTGCGGACACGAGTATCAATT-CGGACT 196
...||||..|.|||.|..|||||.|||.|.||..|..|||.|| |||| |
RBAM_014970__ 148 ATAGAATGTACGGCGGCATGCAGAGCGCAAACCGGCCTCACTTCCGGA-T 196
BSNT_02502___ 197 TTGACCTGCTT-GTCGTAACAGTGAAGCAGCATCAGCTTCAGT-CTGTTT 244
|.||||| ||| .|||.|.|.||.||.|||||.|||| |.||| ||||.|
RBAM_014970__ 197 TCGACCT-CTTAATCGCAGCCGTTAAACAGCACCAGC-TAAGTGCTGTGT 244
BSNT_02502___ 245 TTTCGTCG----CTTGA-ACGGATCGGGAA----GACGAATATATTATTT 285
| .|| ||||| || ||| || |||||||.|..|.|||
RBAM_014970__ 245 T----GCGGGATCTTGAGAC-GAT----AAAAGGGACGAATGTGCTGTTT 285
BSNT_02502___ 286 TTGCAAAACGGCATGGGGCATATCCACGACCTAAAAGACTGGC--ACGTT 333
|||||||||||||||||.||.||.||||||.|.|||||.|||| |||
RBAM_014970__ 286 TTGCAAAACGGCATGGGACACATACACGACATTAAAGATTGGCATACG-- 333
BSNT_02502___ 334 GGCCATTCCATTTATGTTGGAATCGTTGAGCACGGAGCTGTAAGAAAA-- 381
|..|||||..||||||..||.|..|||||||||||||| |.||||
RBAM_014970__ 334 GATCATTCGCTTTATGCCGGCACTGTTGAGCACGGAGC----AAAAAAGA 379
BSNT_02502___ 382 --TCGGATACA-GCTGTTGATCATACAGGCCTAGGTGCGATAAAATGGAG 428
||.||| || ||.|||||.|||||.||....||.||..|||.||||||
RBAM_014970__ 380 TTTCAGAT-CATGCCGTTGAACATACGGGAGCGGGAGCCGTAAGATGGAG 428
BSNT_02502___ 429 CGCATTCGACGATGCTGAACCAGACCG-----GCTGAACATCATGTTT-- 471
.|.||||..||.| .||.|.||| |||.||.|.|||.|||
RBAM_014970__ 429 TGTATTCAGCGCT-----TCCCGGCCGGAAACGCTCAAAAGCATCTTTTC 473
BSNT_02502___ 472 CAGCAT-AACCATTCGGATTTTCCGATTTATTATGAGACGGATTGGTACC 520
|.|||| .||| .|||||||||..|.|||.||||||..||.|||||.|
RBAM_014970__ 474 CGGCATGCACC---GGGATTTTCCCGTATATGATGAGAACGACTGGTATC 520
BSNT_02502___ 521 GTCTGCTGACGGGCAAGCTGATTGTAAATGCGTGTATTAATCCTTTAACT 570
|.|||.|.|||||.||.|||||..||||||..||.|||||.||.||||||
RBAM_014970__ 521 GGCTGTTAACGGGAAAACTGATCATAAATGTATGCATTAACCCGTTAACT 570
BSNT_02502___ 571 GCGTTATTGCAGGTGAAAAATGGAGAACTGCTGACAACGCCAGCTTATCT 620
||.||..|||..||||||||.|||||.|||.|.|||| ||..
RBAM_014970__ 571 GCATTGCTGCGCGTGAAAAACGGAGAGCTGGTAACAA---------ATGA 611
BSNT_02502___ 621 GGCT---------TTTAT--GAAGCTGGTATTTCAGGAGGCATGCAG-CA 658
.||| |.||| |||.| ||.|||.|.||.|| |.|| |
RBAM_014970__ 612 CGCTTACAAAAAATATATGAGAAAC--GTGTTTGAAGAAGC--GGAGAC- 656
BSNT_02502___ 659 TTTTAAAACTTGAAAA-------CGA---AGAAAAGGCTTGGGAGCGGGT 698
||.||||| ||| ||||||.||.|||.|...|||
RBAM_014970__ 657 ----AATACTTG----GCCTCGCCGATAGAGAAAAAGCGTGGAACAAGGT 698
BSNT_02502___ 699 TCAGGCCGTTTGTGGACAAACGAAAGAGAATCGTTCATCAATGCTGGTTG 748
|...|..|||||..|||..|||.||.|.||||.|||.||.|||||.||.|
RBAM_014970__ 699 TTGCGAAGTTTGCAGACTGACGGAAAAAAATCATTCTTCCATGCTCGTCG 748
BSNT_02502___ 749 ACGTCATTGGAGGCCGGCAGACGGAAGCTGACGCCATTATCGGATACTTA 798
|..||||.|.||||.|||.|||.||.||.||.||.||||||||.|||.|.
RBAM_014970__ 749 ATATCATGGCAGGCAGGCGGACAGAGGCCGATGCGATTATCGGCTACCTT 798
BSNT_02502___ 799 TTGAAGGAAGC---AAGTCTTCAAG-GTCTTGAT-----GCCGTCCACCT 839
.|.||.||||| |||.| | | ||| |||||.||.||
RBAM_014970__ 799 GTAAAAGAAGCGGAAAGCC-----GCG----GATTGCCGGCCGTTCATCT 839
BSNT_02502___ 840 AGAGTTTTTATATGGCAGCATCAAAGCATTGGAGCGAAATACAAACAAAG 889
...|||||||.|..|||||||.|||||.||.||..||||
RBAM_014970__ 840 CCCGTTTTTACACCGCAGCATAAAAGCGTTAGAAAGAAA----------- 878
BSNT_02502___ 890 TCTTTTGA 897
.|||
RBAM_014970__ 879 ----CTGA 882
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