Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02484 and RBAM_014830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:14
# Commandline: needle
# -asequence dna-align/BSNT_02484___ylbD.1.9828.seq
# -bsequence dna-align/RBAM_014830___ylbD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02484___ylbD-RBAM_014830___ylbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02484___ylbD-RBAM_014830___ylbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02484___ylbD
# 2: RBAM_014830___ylbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 440
# Identity: 318/440 (72.3%)
# Similarity: 318/440 (72.3%)
# Gaps: 70/440 (15.9%)
# Score: 1176.0
#
#
#=======================================
BSNT_02484___ 1 GTGGCGAATCAACATGCCAAT-----CATTCAATCAATGACTTTAAACAA 45
||||||||||| .|||| ||.||||||.||||.|||||||||
RBAM_014830__ 1 GTGGCGAATCA-----GCAATCACGGCAATCAATCGATGATTTTAAACAA 45
BSNT_02484___ 46 TTCGTCAAAAAGCATCCCAAGCTGATAAAAGAAGTGCGCAAAGAACAAAG 95
|||||.||||||||||||||.|||||..||.|.||.|||||.||||||||
RBAM_014830__ 46 TTCGTAAAAAAGCATCCCAAACTGATCCAAAATGTTCGCAAGGAACAAAG 95
BSNT_02484___ 96 AAGCTGGCAGGACGTATATGAAAATTGGGTCCTCTTCGGGGAGAGCGACC 145
||||||||||||.||.|||||||||||||| |||||.|||.|||
RBAM_014830__ 96 AAGCTGGCAGGAAGTCTATGAAAATTGGGT--TCTTCTGGGCGAG----- 138
BSNT_02484___ 146 CGATTTGGGATCCG-TATCGGGAACCGGAAGAAGCTTCT------GAAGC 188
||| |||||| ||| |||||| |||.| ||.||
RBAM_014830__ 139 -GAT----GATCCGATAT--GGAACC--------CTTTTAAAGACGAGGC 173
BSNT_02484___ 189 TGT---GCCT------------GAAAC---------ACC-GC--AAAAAA 211
.|| |||| ||||| ||| || ||||||
RBAM_014830__ 174 CGTTCAGCCTTCTTCCGACGCGGAAACCAAAAAGGAACCAGCTGAAAAAA 223
BSNT_02484___ 212 ATGATTTTGTCTCGAAAATGGTGACAGCGGTGAAAAAGATGGATGTCAAT 261
|.|||||.||.||.||||||||.||.||.||.||||||||||||.||||.
RBAM_014830__ 224 ACGATTTCGTTTCAAAAATGGTCACTGCCGTCAAAAAGATGGATATCAAC 273
BSNT_02484___ 262 CAAATGAACGAACAAATCAATAAAATGAGCCAGTCGATCTCATCGTTGCA 311
||||||||.||.||.|||||||||||||||||.||.||.|||||.|||||
RBAM_014830__ 274 CAAATGAATGAGCAGATCAATAAAATGAGCCAATCCATTTCATCATTGCA 323
BSNT_02484___ 312 AAGCCTTCTTAATAC-ATTTTCCGGAAGCGGACA-GAAGCATTCTCAGCC 359
||||||| ||||..| ||||||.||.|||.| || ||||||..|.|.||.
RBAM_014830__ 324 AAGCCTT-TTAAGCCAATTTTCGGGGAGCAG-CACGAAGCAGCCCCGGCA 371
BSNT_02484___ 360 AGGTTCTGGACAGCATCCTTTTTCTTTTCGAAAGGATTAA 399
|||.||.|||||.|||||||||||.||..|||||||||||
RBAM_014830__ 372 AGGATCCGGACAACATCCTTTTTCGTTCAGAAAGGATTAA 411
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