Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02483 and RBAM_014820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:14
# Commandline: needle
# -asequence dna-align/BSNT_02483___ylbC.1.9828.seq
# -bsequence dna-align/RBAM_014820___ylbC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02483___ylbC-RBAM_014820___ylbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02483___ylbC-RBAM_014820___ylbC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02483___ylbC
# 2: RBAM_014820___ylbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1069
# Identity: 775/1069 (72.5%)
# Similarity: 775/1069 (72.5%)
# Gaps: 56/1069 ( 5.2%)
# Score: 2743.0
#
#
#=======================================
BSNT_02483___ 1 TTGAAAAATATATTGAGAGCAATGGTTATCCTTTTGATTATCTGCGGAAC 50
|||||||||||....||.||..|.||||||||||||.||||.|.||||.|
RBAM_014820__ 1 TTGAAAAATATCGCAAGGGCTCTCGTTATCCTTTTGCTTATTTACGGAGC 50
BSNT_02483___ 51 CTATGTTCTGTTTATTCAATATGGATCTGTTCCTGAAAAGAAATCAAATG 100
.||||||||||||||.|||||||||||.|.||||.|.||.||..|..||
RBAM_014820__ 51 GTATGTTCTGTTTATACAATATGGATCGGCTCCTCAGAAAAAGACGGAT- 99
BSNT_02483___ 101 ACAG--CGAGCCTCAGGTGTCGAATGAGGAAGCGCAAAGCGGCAAACGAA 148
||| .|||||||||||.||.|||||.|||| |.|||||.|||||..
RBAM_014820__ 100 -CAGGAGGAGCCTCAGGTTTCCAATGAAGAAG---AGAGCGGAAAACGGC 145
BSNT_02483___ 149 TACATATGCCGACTTCAGGGTTATTGTCCTTCATGGGCAA----GCCCGC 194
|..|.||||||.|.||.||..|..|.||..|||||||.|| | ||||
RBAM_014820__ 146 TGAAAATGCCGTCATCCGGACTGCTTTCTCTCATGGGGAAATCTG-CCGC 194
BSNT_02483___ 195 CGATGAAGTAACGAAAAAG---CTTGGGGAACCTGAACGTATTGACCCTT 241
||||| .||||||| |||||||||||....||.|..||.||||
RBAM_014820__ 195 CGATG------TGAAAAAGAAACTTGGGGAACCGTCCCGGAAAGATCCTT 238
BSNT_02483___ 242 CGGCTTATGATTACGATTGGTGGGTATACAATCAAGGTAAGGATCAATAT 291
|.||.||.||||||||.||||||||.|||||.||.||.||.||.|||||.
RBAM_014820__ 239 CTGCCTACGATTACGAGTGGTGGGTGTACAACCAGGGGAAAGACCAATAC 288
BSNT_02483___ 292 ATCCAAATCGGGGTATTAAACAATAAAGTGGTCACATTATTCGCGTCGGG 341
.|.|||.||||..|.||.||..||||||..||.||.||||.|||.|||||
RBAM_014820__ 289 GTACAAGTCGGTATTTTGAATGATAAAGCCGTGACTTTATACGCTTCGGG 338
BSNT_02483___ 342 TAATGATATTAACGCCAAGCCTTTCAAAATTGGAGAATCAACTGGCGAAG 391
.|..|..||.|||||.||.||.||.||.||.||.|||||.||.|||||||
RBAM_014820__ 339 AAGCGGCATCAACGCAAAACCGTTTAAGATCGGCGAATCGACGGGCGAAG 388
BSNT_02483___ 392 TATTCAAGACCACCCAGGTGGCACCATTTGTGAATGTAGAGT-ATAAAGG 440
|.||.||.||.||.|||||..|.||.|||||.||||| ||.| |.||.||
RBAM_014820__ 389 TTTTTAAAACGACGCAGGTTTCTCCTTTTGTCAATGT-GACTGACAAGGG 437
BSNT_02483___ 441 AAATTCCTATCGGTTTGAATTTTCTGAAGAGGATATCAATACAAGACCGA 490
|||..|.||||||||.||.|||||||||||.|||||||||||..|.||.|
RBAM_014820__ 438 AAACACGTATCGGTTCGAGTTTTCTGAAGAAGATATCAATACCCGTCCCA 487
BSNT_02483___ 491 CTGTAAAGGTAGGAAAGATGTATGTCCAGCTGTATATGGACAAATTTGAG 540
|.||.|||.||||....||||||||.||||||||.||||||||||||||.
RBAM_014820__ 488 CCGTCAAGATAGGCGGAATGTATGTTCAGCTGTACATGGACAAATTTGAC 537
BSNT_02483___ 541 GGGAAGCTATCCAGCATCAGGGCGTTTGATGCGCAGACCTTTGTAAAGCA 590
|||||.||.||.|||||||||||.|||||||||.|.||..||||.||.||
RBAM_014820__ 538 GGGAATCTGTCAAGCATCAGGGCATTTGATGCGGAAACACTTGTGAAACA 587
BSNT_02483___ 591 AAGACCTTATGAGGTAGTGTACCGCGGGGAATTAATTAA-----ACCGAA 635
|||.||.||||||||..|||||.|.|| || ||.|||
RBAM_014820__ 588 AAGGCCGTATGAGGTCATGTACAGAGG----------AAAGCTGACAGAA 627
BSNT_02483___ 636 ----AGCC-GTTTCAGATGAGAAATGGAAAAAGATCCAAACAACGAGCGA 680
|||| |||||.|||.|.||||||||..|.||..||..|.||||.||
RBAM_014820__ 628 CCCGAGCCTGTTTCTGATAAAAAATGGAACGACATTGAACGAGCGAGTGA 677
BSNT_02483___ 681 AAAGCAAATCCTTGATTTGACGAATGTCATACGCGTTAAACACGGACTTG 730
..||||.||.||.|||.|.||.||||||||.|||||.|||||||||||||
RBAM_014820__ 678 GCAGCAGATTCTCGATATTACAAATGTCATCCGCGTAAAACACGGACTTG 727
BSNT_02483___ 731 CGAAGCTTGAGTGGGATCAGCCAACGGCG-----GAAGTGGCATTTGGAC 775
|.|.|||..|.||||| |.|.|||| .||||||||||.||.|
RBAM_014820__ 728 CAAGGCTGAAATGGGA-----CGAAGGCGCCGCAAAAGTGGCATTCGGCC 772
BSNT_02483___ 776 ATAGTGAGGATATGAAGGAAAATAATTATTTCTCCCATGTCTCTAAAAAA 825
|.||..||||.||||||||.||.||.||||||||.||.|||||.||.|||
RBAM_014820__ 773 ACAGCAAGGACATGAAGGATAACAAGTATTTCTCTCACGTCTCAAAGAAA 822
BSNT_02483___ 826 TACGGCTCGCTGAAAGACCGCTTAGAAGAAGGGCATGTTGACTTTCAGCA 875
|||||..|.|||||.||||||||.|||.||||..||||..|.|..|.|.|
RBAM_014820__ 823 TACGGGACTCTGAAGGACCGCTTGGAAAAAGGCGATGTGAAATACCGGGA 872
BSNT_02483___ 876 AGCGGGAGAAAATATCGCATACAATTATGTGGACGGTCCGGCTGCTGTAG 925
.||.||.||||||||.||.|||||.||||||||||||||.||.||.||.|
RBAM_014820__ 873 GGCCGGTGAAAATATTGCCTACAACTATGTGGACGGTCCTGCAGCCGTGG 922
BSNT_02483___ 926 AAGGCTGGCTGAATAGCGAAGGCCATCGAAAAGCGCTTCTGAATTCAGAT 975
|.|||||||||||.|||||||||||..||||.|||||..|.|...|.|||
RBAM_014820__ 923 AGGGCTGGCTGAACAGCGAAGGCCACAGAAAGGCGCTGTTAAGCCCGGAT 972
BSNT_02483___ 976 TATACGCATCTTGGTGTCGGAGTAGACCGGAAATATTACACCCAAAATTT 1025
||||||||.||.||||||||.||.||.|.|||.|||||.||.|||||.||
RBAM_014820__ 973 TATACGCACCTCGGTGTCGGCGTTGATCAGAAGTATTATACGCAAAACTT 1022
BSNT_02483___ 1026 TATTAAGCGATG---GTAA 1041
.|||||||..|| ||||
RBAM_014820__ 1023 CATTAAGCCTTGGCAGTAA 1041
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