Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02464 and RBAM_014680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:12
# Commandline: needle
# -asequence dna-align/BSNT_02464___ylaL.1.9828.seq
# -bsequence dna-align/RBAM_014680___ylaL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02464___ylaL-RBAM_014680___ylaL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02464___ylaL-RBAM_014680___ylaL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02464___ylaL
# 2: RBAM_014680___ylaL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 527
# Identity: 339/527 (64.3%)
# Similarity: 339/527 (64.3%)
# Gaps: 91/527 (17.3%)
# Score: 1109.5
#
#
#=======================================
BSNT_02464___ 1 ATGAGCGTTATCCAAGTAAAAGGCAATGTTACATATCCAATTACCATTGA 50
|||||||||||.|||||||||||||||||||||||.||.|||||.|||||
RBAM_014680__ 1 ATGAGCGTTATTCAAGTAAAAGGCAATGTTACATACCCGATTACAATTGA 50
BSNT_02464___ 51 TCCAAGCGTATGGATTTTTGATGATCGCAAATTTTCGTTTGACCGCAAAG 100
|||.||.||.||||||||.|||||.|||||.|||.|||||||
RBAM_014680__ 51 TCCGAGTGTCTGGATTTTCGATGACCGCAAGTTTCCGTTTGA-------- 92
BSNT_02464___ 101 GGGACAGTCAAGACACATATTTACAATCAGCCGG-------GGA------ 137
|| |.||||||||.| |||
RBAM_014680__ 93 ---------AA-----------AAAATCAGCCCGTTCATCCGGACGGCTC 122
BSNT_02464___ 138 ---TGAATCCGA---------CCTTGATCCGGAACGCGTCATCAGAGAGG 175
.|||.||.| .||||||||||||||.||.||||||||.|
RBAM_014680__ 123 TGCAGAAACCCAGGAGCATACGCTTGATCCGGAACGGGTGATCAGAGAAG 172
BSNT_02464___ 176 GGCGAATTGCCCCGCCTACATTAAAGACGGAAAAACAATATGAGAAGCAA 225
||||.|||.|.|||||.||.|||||.|..|||||||..|||||.||..||
RBAM_014680__ 173 GGCGCATTTCGCCGCCGACTTTAAAAAGCGAAAAACGTTATGAAAAAGAA 222
BSNT_02464___ 226 AAACTGATGAACGGCAGTTTCGCAATGAGACTTGGGACTGTCCTGAAAAA 275
|.|||||||||||||||.|||||.||||..||.||..||||..|...|||
RBAM_014680__ 223 AGACTGATGAACGGCAGCTTCGCCATGAAGCTCGGCGCTGTTTTAGCAAA 272
BSNT_02464___ 276 TGCTGAGCCGAACAG-----------CTCTGCGACACAATGTGTATTTGT 314
|||.|||||||| || ||.|||| || |.|||||
RBAM_014680__ 273 TGCCGAGCCGAA-AGAAAGCGCTGTCCTGTGCG---CA---TTTATTT-- 313
BSNT_02464___ 315 CACAAGTTCGGGAAAG-GCCGCCGTTTCTCTGGAAACCGCTCTGAACAGT 363
|||..|| .||||| .|||..||..|.||.||||..||..||.||...
RBAM_014680__ 314 --CAAAATC-AGAAAGAACCGAAGTGGCGCTCGAAAAGGCGATGGACGCA 360
BSNT_02464___ 364 ATTGTCCATTTCAGTGAGGCAGGCAAGCCGATTCAAGAAGGCGGCCCCGT 413
||.|..||||||||.||.||.||.||.||..|||||||.|||||.||.||
RBAM_014680__ 361 ATCGCGCATTTCAGCGATGCGGGGAAACCCCTTCAAGACGGCGGACCGGT 410
BSNT_02464___ 414 GCATATTTACTTTGAAGACCCGG----TTCATCACAAACAGCCGATTACC 459
.|||.|||||.|.|| ||| || |.|.||| |||||.||.
RBAM_014680__ 411 CCATTTTTACGTGGA-----CGGCGACTT--TGAAAAA---CCGATAACG 450
BSNT_02464___ 460 GATGTAAAAGAGATCGAAATCATTTAA 486
|..||.|.|||.||||||.|..|.|||
RBAM_014680__ 451 GGCGTCACAGAAATCGAAGTTTTATAA 477
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