Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02462 and RBAM_014660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:12
# Commandline: needle
# -asequence dna-align/BSNT_02462___ylaJ.1.9828.seq
# -bsequence dna-align/RBAM_014660___ylaJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02462___ylaJ-RBAM_014660___ylaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02462___ylaJ-RBAM_014660___ylaJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02462___ylaJ
# 2: RBAM_014660___ylaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 668
# Identity: 440/668 (65.9%)
# Similarity: 440/668 (65.9%)
# Gaps: 82/668 (12.3%)
# Score: 1353.5
#
#
#=======================================
BSNT_02462___ 1 GTGCGAATTCTTTTCATTATCGTAC-AGC--TGACACTTATCCTGTCCGC 47
|||||||||||||||||||||.||| ||| || .|||||||..|||.
RBAM_014660__ 1 GTGCGAATTCTTTTCATTATCATACAAGCCTTG---TTTATCCTTACCGG 47
BSNT_02462___ 48 TTG---TGCCTATCAACAAGGAAAACAG-GGCCAGAATGTTGAAAAAGAA 93
.|| ||| |..|| ||||...|.| ||||..|||.||.|.||.|||
RBAM_014660__ 48 CTGCACTGC---TGTAC-AGGACGGCCGCGGCCGCAATATTCAGAACGAA 93
BSNT_02462___ 94 TCAACAAGA-CAGCAGGAGACTAAACCGATTCACGTAAAGGACACAACTC 142
|||.| .|| ||||..||..|.||||||||.||.||.||..|.||..|||
RBAM_014660__ 94 TCAGC-CGATCAGCGCGATGCAAAACCGATCCATGTGAAAAATACGGCTC 142
BSNT_02462___ 143 AAGAAACAAAAGACAAT-------GGAACAAGAACGGATATTGCCAAGCA 185
..||.|||...||.||| || ||.||.||.||.|||||
RBAM_014660__ 143 CTGAGACAGCTGAAAATCCCGGCCGG-------ACAGACATCGCTAAGCA 185
BSNT_02462___ 186 TCTTGTC-AGCGTTGCTGAAAAAAACCCCG--ACGTCAAGGATGCAACAG 232
|||.||| || ||..|.|||||||.||||| |..||| |||||.||.|
RBAM_014660__ 186 TCTCGTCGAG-GTAACCGAAAAAATCCCCGGCATTTCA--GATGCCACCG 232
BSNT_02462___ 233 CCGTTGTGCTGGGGGGTTATGCTGTTGTTGGGATTGATGTCGATGATACT 282
|.|||||.||.||..|.||..|.|||||.||.||.|||||.|||||.|.|
RBAM_014660__ 233 CGGTTGTACTCGGAAGATACTCCGTTGTCGGTATCGATGTGGATGACAAT 282
BSNT_02462___ 283 TTGGACAGAAGCAAAGTGGAAACCATTAAATATTCTGTAGCTCAGGCGCT 332
||.||.||||||||||||||.|.|||||||||..|.||.||.||||||.|
RBAM_014660__ 283 TTAGAAAGAAGCAAAGTGGAGAGCATTAAATACACGGTTGCCCAGGCGTT 332
BSNT_02462___ 333 AAAGAATGATCGATATGGCGCCAACGCAGTAGTCATTGCTGATCCCGATA 382
|||.||.||||..||.||||||||.||.||.|||.|.||||||||.||||
RBAM_014660__ 333 AAAAAACGATCCTTACGGCGCCAATGCCGTTGTCGTGGCTGATCCTGATA 382
BSNT_02462___ 383 CGGTAGGCCGCCTTCGCGAAATGAGCAGAGAAATCAGCGAGGGCCATCCG 432
||||...|||.||..|.|..|||.||||.||.||.|..|..||||..||.
RBAM_014660__ 383 CGGTTTCCCGTCTGAGAGGCATGGGCAGCGACATTAAGGCCGGCCGCCCC 432
BSNT_02462___ 433 GTAACAGGTATACTGGATGAATTAGCTGCAATTGTCGGCCGAGTGCTTCC 482
||..||||.||..||||.|||.|.||.||.||.||||||||.||..|.||
RBAM_014660__ 433 GTTTCAGGCATTTTGGACGAACTTGCCGCCATCGTCGGCCGTGTCATGCC 482
BSNT_02462___ 483 CGAAGTGCCTAACGATGTGATTGACAATGAAGACGA---ACCG---CAAA 526
.|||||.||.||.|||||||..|||||||||.|.|| |||| |||.
RBAM_014660__ 483 GGAAGTCCCGAATGATGTGACCGACAATGAAAAAGAATCACCGACTCAAT 532
BSNT_02462___ 527 CAA------AGCAGCAAAATG-ACCAATTAAATAGAAAACAGCAACAGGA 569
|.| |.|||| || ||||| |||.|.||| |||| |
RBAM_014660__ 533 CGAATGATGATCAGC----TGAACCAA------AGAGACCAG-AACA--A 569
BSNT_02462___ 570 AATGGAGAAGGAGCAAAACGATCAATCTGATCATCATATGAAAAA----- 614
..||.|.||.||.||.|||||||||||.|||||||||||||||||
RBAM_014660__ 570 GCTGCAAAACGAACAGAACGATCAATCGGATCATCATATGAAAAACCGCC 619
BSNT_02462___ 615 --GAACAACAATGACTAA 630
.||
RBAM_014660__ 620 GGTAA------------- 624
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