Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02450 and RBAM_014560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:11
# Commandline: needle
# -asequence dna-align/BSNT_02450___ylaA.1.9828.seq
# -bsequence dna-align/RBAM_014560___ylaA1.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02450___ylaA-RBAM_014560___ylaA1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02450___ylaA-RBAM_014560___ylaA1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02450___ylaA
# 2: RBAM_014560___ylaA1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2038
# Identity: 715/2038 (35.1%)
# Similarity: 715/2038 (35.1%)
# Gaps: 1073/2038 (52.6%)
# Score: 1903.0
#
#
#=======================================
BSNT_02450___ 1 ---TTGGAGTTATTCAGTCATTATGTATT--GCATTTCGAACGTTATTTT 45
|..|||.|.||||||||| |.|||| |||||||||..|.|||||.
RBAM_014560__ 1 ATGTCAGAGATTTTCAGTCAT--TTTATTCAGCATTTCGACAGGTATTTC 48
BSNT_02450___ 46 ATATTAAGCAGACAAAGCACCCTGCTGATTCAATGGTCA---------AT 86
||.|||||||||||.|||....||.|.|||||.|||||| .|
RBAM_014560__ 49 ATTTTAAGCAGACAGAGCGTGTTGATCATTCAGTGGTCAGCCGTCTGCCT 98
BSNT_02450___ 87 TGTTGTTCTGGCGGGCTTATA-------TCTTTTGGTGCATCATCCCAAA 129
||.|||| ||||| .|||| ||||||.|||
RBAM_014560__ 99 TGCTGTT---------TTATACGCGCTGACTTT-------TCATCCGAAA 132
BSNT_02450___ 130 ATAAACCTGCAGCGCACAATGTTCTTG-GCGGGT---GTTATGTTGCGG- 174
|| |||| |.|| |.|.|| |||.|.||..||
RBAM_014560__ 133 AT-------CAGC----------CGTGAGAGAGTTTGGTTTTATTCAGGA 165
BSNT_02450___ 175 ATTGTGCT----GC--------TGGCGGGAGTGTCTGTTGAACTTATTCA 212
|||.|||| || |.|||||..|..|.||||||.|..||||
RBAM_014560__ 166 ATTCTGCTCAGGGCCGTATTATTAGCGGGCATAACAGTTGAATTGGTTCA 215
BSNT_02450___ 213 CCAGGTGCAATCAACAAACTTCACCAGCGC-TTACTTAAGAGAGGACGGA 261
.||||||||....||..||||.|.| |||| .||.||.|.|..|||.|.|
RBAM_014560__ 216 TCAGGTGCAGAGTACTCACTTTAGC-GCGCACTATTTGATATCGGAAGAA 264
BSNT_02450___ 262 AAAGAACTGTTGCCGCTGCTGCATTTTTTGTTATACGGATATGTGCTGCT 311
|.|||.||..|.|||.|..|.|||.|.||..|.||.||.|||||||||||
RBAM_014560__ 265 AGAGAGCTTCTTCCGATCGTTCATCTCTTAATGTATGGGTATGTGCTGCT 314
BSNT_02450___ 312 GACGGCTTTTCACTATATGTTGATGCCGCGTGATCATGGCGGAAAGGGTA 361
.||.||.||||||||||||.|.||||||||.||.||..|.||||||||.|
RBAM_014560__ 315 CACCGCGTTTCACTATATGCTCATGCCGCGGGAGCAGAGGGGAAAGGGCA 364
BSNT_02450___ 362 AGTTTTATACGTTCGACCTTGCCGTTGTCAGTTTGCCAATCGTACAAATG 411
.||||||||||||.||.||..|.||.||.|...||||..||.|.||..||
RBAM_014560__ 365 TGTTTTATACGTTTGATCTCACTGTGGTGACACTGCCGGTCATTCAGCTG 414
BSNT_02450___ 412 ATATTCAGTTTCTTTACGTATTGGAAGGAAAATCCGGAT----------- 450
||.|||||.||.||..|.|..|||||....|.|||.|||
RBAM_014560__ 415 ATCTTCAGCTTTTTCGCTTTCTGGAATATCAGTCCCGATGCGATGGCGGG 464
BSNT_02450___ 451 GGAGTCGAGCCAGTTGCATTCG-TGTTTCTGTTTTTCATTA--------T 491
|||| ||...||| |||| || ||.|.|||.|||| |
RBAM_014560__ 465 GGAG--GATATAGT----TTCGATG---CTATGTTTTATTACGGTTGTTT 505
BSNT_02450___ 492 TACT-------CTTTCTATTGTGTTGAATGTTGTGTTTTTCAAGCTGTAT 534
|||| .|||||| ||||||||.|.||.||.||..|||||
RBAM_014560__ 506 TACTTCTGCTGATTTCTA------TGAATGTTTTATTCTTTAAAATGTAT 549
BSNT_02450___ 535 TGGAGAAC--AAATAAGATTTTACTAGGCTTATTTTATACGCT--GATTA 580
|||| ||| |.|...|.||||| |.|||.|.|||||| ||| |.|.|
RBAM_014560__ 550 TGGA-AACCGAGACCTGTTTTTA-TCGGCGTGTTTTAT--GCTGGGGTCA 595
BSNT_02450___ 581 TCGGACTGCTTGTCTTGCTGCT---TGCGCCATATCCCAATCAAATCTCA 627
||||.|||.|.||.|.|.|||| ||||||.|...||..|..|| ||
RBAM_014560__ 596 TCGGGCTGTTGGTGTGGGTGCTCGCTGCGCCCTCGGCCGGTGTAA---CA 642
BSNT_02450___ 628 AAAGATTATGGTGCAG--TAATGCCATATACGATTTATTTGGCAATGGCG 675
||||||||.| |||| |..|.||||.||||.|.|||||..|.|||||.
RBAM_014560__ 643 AAAGATTACG--GCAGACTTCTCCCATTTACGGTGTATTTAACGATGGCC 690
BSNT_02450___ 676 GGATTTTTGATGAGCTATCATCTGTTCCAAAAGTCAGGAAAGGTTTATG- 724
||.|||.||||||.|.|||||.|.||.||...|||| ||.|||.|.| |
RBAM_014560__ 691 GGTTTTCTGATGACCCATCATTTATTTCATCGGTCA-GACAGGATCA-GA 738
BSNT_02450___ 725 -TGCGTGTGAATAA-------GTGGGTGACGATGGCTGTCATGGTGTTTT 766
.|||...|||.|| |.|||.| |.|.|||.| .|||| |||.
RBAM_014560__ 739 CAGCGGACGAAAAACTTTCTTGCGGGAG-CAACGGCCG--CTGGT-TTTA 784
BSNT_02450___ 767 TTGTCCTGCTGTTAAATCCGATATATAACATAGGAACGGCTGCTTTCGCT 816
||||| .|.||.||||||.||||.||....|||...||.|||||.||.
RBAM_014560__ 785 TTGTC---TTTTTGAATCCGGTATACAATGCGGGAGATGCCGCTTTTGCG 831
BSNT_02450___ 817 GTATCAAAACCGATAAATGTC-CATGATTCATTCAATTATGTCGGGGA-- 863
||.|||||.|| ||||.| .|.|||.| |||.|.|||
RBAM_014560__ 832 GTTTCAAAGCC----AATGGCTGAAGATAC---------TGTTGAGGATG 868
BSNT_02450___ 864 -----GCACATTTCA--TCAGAAAAAGCGGAACAGATACTAAAGTCATTT 906
|.||||.||| |||||..|||||||||.|||.||.|..||||||
RBAM_014560__ 869 TTGGTGGACATATCACTTCAGACCAAGCGGAACGGATCCTTACATCATTT 918
BSNT_02450___ 907 TTTCCTACGGATGAAACAC--TTTATTTGCAC-GATA-CAAACATGGATG 952
|||||..|.|| |||.| | ||||||| .|| ||.| |||.|| ||||.
RBAM_014560__ 919 TTTCCGGCAGA-GAATC-CGATTTATTT-AACAGAAACCAATCA-GGATC 964
BSNT_02450___ 953 TGCATTATTTCTACTCATTTGAAA--GCAAGAGTTATAAAGCTGAGGTAG 1000
|.|||||.||.||| |.|||.||| |.|||| ||||.||||.||.||.|
RBAM_014560__ 965 TCCATTACTTTTAC-CGTTTTAAAACGAAAGA-TTATGAAGCGGAAGTGG 1012
BSNT_02450___ 1001 ATGAAGTATCGCAGCTGATTCGTAATTATGAATA-CTTACAAA----AAG 1045
|.||.||.||.|...|||||...|||||..|||| ||||.||| |||
RBAM_014560__ 1013 ACGAGGTTTCCCGATTGATTACAAATTACCAATATCTTAAAAACCGGAAG 1062
BSNT_02450___ 1046 --CGCATGGGAAAAAGC--TAACGAATCAGGAGTACAAGCGAAAGTCCAT 1091
|||| | |||
RBAM_014560__ 1063 GCCGCA----------CTTTAA---------------------------- 1074
BSNT_02450___ 1092 CGCTTTCCTTGAGCGACACGGACGTGTGTTACATAAGGATCATATCGAAA 1141
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1142 CAAAGGTATCTCAAGAAGACGGCCAGACAGTCGTACGTATTTACCTGAAA 1191
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1192 AATCAACTTCATAAAAAAGATCATGCTGATGATGGCGCGGTATTTTATTG 1241
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1242 GGAAAAGGAAACCTTAATGGGGTTTAGTGAAGATCCTTCGATTTATCAGC 1291
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1292 TTGACTCTCTTCTGCATGTTCATATAACAGAACAAAACATTCACGATAAA 1341
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1342 GTGGAACAAATGTTTACAGCGCTGAACATATCAAAACAGCCTTATCAGAT 1391
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1392 CACTGATATTGAAAGCGACAGCCTGCTCGGAAGCATGGTGAGAGTTGAAA 1441
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1442 CAAAAGATGGAATTGTATTGGAGTTTGATGGAGAATCCGGTAGTTTACAC 1491
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1492 AGTCTCTCGATTCCAATGAAAAAGGAAATTTCACTGACTAACAGCCGGCT 1541
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1542 GCAGCGGCAGGTATTAACGGTCTTCGATGCTGATGTATCAGAAATGAAGA 1591
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1592 AAAAAAGCAGTCAGAGTGACATGGTGATGTATACTGATTCTTCTAAAACA 1641
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1642 TATGAGTTTTTTGAAGATCAAGGTCAGCTAAACGTTTATGTATACAGCGA 1691
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1692 TACACCTAATCAGTCATTCCCCTATACGTATCGTAATGGAACATTGGCTT 1741
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1742 ACGAAAAGGTAGCTTCTCTATATCAGGATGTTATTTACAAAAAGCGTATG 1791
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1792 CGTCCGATTATCGTTCAAAGAGAGGATGAACGGCATTATGCATGGCTGAT 1841
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1842 CATTATTCAGCCGTTTGGTTCAAATCGCCATGATGCCTATGTAGTGGATG 1891
RBAM_014560__ 1074 -------------------------------------------------- 1074
BSNT_02450___ 1892 GAGAAACACAAGAGGTGAAAAGTCTTTATGAATCATAA 1929
RBAM_014560__ 1074 -------------------------------------- 1074
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