Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02443 and RBAM_014540

See Amino acid alignment / Visit BSNT_02443 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:10
# Commandline: needle
#    -asequence dna-align/BSNT_02443___ykzC.1.9828.seq
#    -bsequence dna-align/RBAM_014540___ykzC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02443___ykzC-RBAM_014540___ykzC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02443___ykzC-RBAM_014540___ykzC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02443___ykzC
# 2: RBAM_014540___ykzC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 494
# Identity:     322/494 (65.2%)
# Similarity:   322/494 (65.2%)
# Gaps:          67/494 (13.6%)
# Score: 1023.5
# 
#
#=======================================

BSNT_02443___      1 ATGCTGGGAAGTAGGCCATTTGAGCAGGATGATCTCAGCTTGTTAGAAAA     50
                     ||||||..|.||||....|||||..|.||.||||||.|.||..|.||..|
RBAM_014540__      1 ATGCTGACAGGTAGAGATTTTGAAGAAGAAGATCTCGGGTTTCTGGAGCA     50

BSNT_02443___     51 GCTCGCGGAGGCTCATCCTGTATGGAAAGAGGAGGAGTTTGGAGATAAAG    100
                     |||.||||..||.||.||.||.||||||.|.||.|||||.|||...|||.
RBAM_014540__     51 GCTGGCGGCTGCACACCCGGTGTGGAAAAACGAAGAGTTCGGAACAAAAA    100

BSNT_02443___    101 ATGCACAAGACTATATCATCTCCTATTCCATGTACAACGGGGTATGGCTT    150
                     ||||....||.|.|||..|..|.||.|||||||||||.||...||||||.
RBAM_014540__    101 ATGCGGCGGAGTTTATGCTTGCATACTCCATGTACAATGGAACATGGCTC    150

BSNT_02443___    151 GTATGGGAAAAAGACGG-TCTGCCTGTTGCCGTCAGCTACCATCTCGAGT    199
                     ||||||||.|..||||| .|| ||||..||||||||.|..|||.|.||.|
RBAM_014540__    151 GTATGGGAGATTGACGGCGCT-CCTGCCGCCGTCAGTTTTCATTTGGAAT    199

BSNT_02443___    200 GGTCTCCTTCAAACGGTAAGCCGTGGCTCGGAA----------CGGTCCT    239
                     ||.|.|||||||||||.||.|||||||||||||          ||.|||.
RBAM_014540__    200 GGGCGCCTTCAAACGGAAAACCGTGGCTCGGAACCGTGGCCGTCGCTCCG    249

BSNT_02443___    240 GATTGACCCGGCTGAAGAAAA---AAAGGGACATGCGAAGATGATCATTG    286
                     ||       |||..||||.||   ||..||||..||      |.||||||
RBAM_014540__    250 GA-------GGCAAAAGAGAAAGGAATCGGACGCGC------GGTCATTG    286

BSNT_02443___    287 AACAGAT------CAGCAAATTGCTTAGAGCCAAACACAAAGCGATGTTT    330
                     ||.||||      |.|      |||.||||...|.||.||||||||||||
RBAM_014540__    287 AAGAGATTGCGGGCCG------GCTGAGAGGGGAGCATAAAGCGATGTTT    330

BSNT_02443___    331 GCGGGAGTTCCCATTGAGC--GCAGTGAATGGATACTGTTTTTAAGCCAA    378
                     .|.|..||||||.|.|| |  |||| ||||||.|..||||||||||||||
RBAM_014540__    331 TCAGCTGTTCCCCTGGA-CAGGCAG-GAATGGGTTTTGTTTTTAAGCCAA    378

BSNT_02443___    379 TGCGGCTTTGAACAGCTGAAAACGGAAAAAGATGA----GAAAGGCAAAT    424
                     |||||||||||||||||.||....||||||||.||    |||    ||..
RBAM_014540__    379 TGCGGCTTTGAACAGCTTAAGCTTGAAAAAGACGATCGGGAA----AAGA    424

BSNT_02443___    425 CATTTATGATCTTGGTGAAGCCTTTAGCAGAAGCTGCCGTATGA    468
                     |||.|||||||.||||||||||.|               |.|||
RBAM_014540__    425 CATATATGATCATGGTGAAGCCAT---------------TGTGA    453


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