Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02428 and RBAM_014310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:09
# Commandline: needle
# -asequence dna-align/BSNT_02428.1.9828.seq
# -bsequence dna-align/RBAM_014310___ykyA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02428-RBAM_014310___ykyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02428-RBAM_014310___ykyA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02428
# 2: RBAM_014310___ykyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 686
# Identity: 277/686 (40.4%)
# Similarity: 277/686 (40.4%)
# Gaps: 301/686 (43.9%)
# Score: 703.0
#
#
#=======================================
BSNT_02428 0 -------------------------------------------------- 0
RBAM_014310__ 1 ATGATTCAAAAAAAGGTATTAGCAGGAATCGGAGCGCTCGGCGCCGCAAG 50
BSNT_02428 0 -------------------------------------------------- 0
RBAM_014310__ 51 TATGCTTCTTGCCGGCTGCGGGGGAAAAGATCCGGCTGAATCGCTTCATG 100
BSNT_02428 0 -------------------------------------------------- 0
RBAM_014310__ 101 ACTCGATGGAAAAAGCCGTTCAAGCGGAAAAACCGTTTCAAAAAGAGCAG 150
BSNT_02428 0 -------------------------------------------------- 0
RBAM_014310__ 151 AAAACATTAGAAAAATTGGAGAAAAAAGAGCATAAGCTATACGACAGCGC 200
BSNT_02428 1 --------------------------------TTGTTGCTTTATCTAATT 18
||||..|..|.|||.| |
RBAM_014310__ 201 GGTTAAACTGAATATGGATGATTACCAGAAAATTGTCACACTGTCTGA-T 249
BSNT_02428 19 AAGGCGCT------TGAAAATGTCAGC-AAGCGCGAAGAACACCT-AAAG 60
.||||.|| ||.||| ||||| || ||.||||.|| ||||
RBAM_014310__ 250 CAGGCTCTGAGCAATGCAAA--TCAGCGAA-----AAAAACATCTGAAAG 292
BSNT_02428 61 CTTGAAAATGACAGCATGAAAAAATCGGAAACAGAATTTGA----GGAAG 106
| .|||||.|||||.||..|..|.||..|||.||..||||| |.||
RBAM_014310__ 293 C-AGAAAAAGACAGTATTGATGATTCAAAAAAAGCGTTTGAATCCGCAA- 340
BSNT_02428 107 CAAAAACGTCAGCGGAACATATTAAGGAAAAAGACA-TAAAAGAAAAGGC 155
.||||||.| |..||.|.||.|||| |.||||.| ||||||||||.||
RBAM_014310__ 341 AAAAAACTT---CTCAAGAAATAAAGG-ATAAGAAAGTAAAAGAAAAAGC 386
BSNT_02428 156 CG---ATGCCGCAGCAAACCAT---ATGGAGAAAAGATATACATCATATG 199
|| ||||.|..|| | |||||||||||.|||.||||.||||
RBAM_014310__ 387 CGGGCATGCTGTCGC------TTTAATGGAGAAAAGGTATGCATCTTATG 430
BSNT_02428 200 GCACTATGTATAAAGAGTATAAAAAAG-CACTTGAGCTTAATAAAAAACT 248
....|.||||.|||.||||..|||||| ||.||.| |||.||||..|.||
RBAM_014310__ 431 ATCTTTTGTACAAAAAGTACGAAAAAGCCATTTCA-CTTGATAAGGACCT 479
BSNT_02428 249 GTATATGCAGCTGAAAGACAAAGATTTGACAAGAGATGATCTGGATCAGC 298
.||||..|.|.|.|||||.|||.|..|.|||..||...|.|||||..|||
RBAM_014310__ 480 TTATAAACTGATTAAAGATAAAAAGCTCACATTAGCGCAGCTGGAAGAGC 529
BSNT_02428 299 AGATCGATAAAGTCAATGCTTCTTATGAAAAGATCCTTAAATATAGCGGA 348
|.|||...|||||.||..|...|||.||||||.|.|.||||.| |||.||
RBAM_014310__ 530 AAATCAGCAAAGTAAACTCAGTTTACGAAAAGGTGCATAAACA-AGCAGA 578
BSNT_02428 349 -GAATTTAATGAACAAACCGAAAAATATAATAAAGCCCGGGAAGATTTA- 396
||.||.|||.||...||..||.|.||.||.|||| .|.|||| |
RBAM_014310__ 579 TGAGTTCAATCAATTTACTAAAGACTACAACAAAG---AGAAAGA---AC 622
BSNT_02428 397 TATGATGCTGCAGGCTATCGTGTGAAAAAGAGCTGA 432
|||.||.|||| |||.||
RBAM_014310__ 623 TATTATTCTGC-------------AAATAG------ 639
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