Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02418 and RBAM_014260

See Amino acid alignment / Visit BSNT_02418 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:08
# Commandline: needle
#    -asequence dna-align/BSNT_02418___adeC.1.9828.seq
#    -bsequence dna-align/RBAM_014260___adeC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02418___adeC-RBAM_014260___adeC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02418___adeC-RBAM_014260___adeC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02418___adeC
# 2: RBAM_014260___adeC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1782
# Identity:    1285/1782 (72.1%)
# Similarity:  1285/1782 (72.1%)
# Gaps:          96/1782 ( 5.4%)
# Score: 4431.0
# 
#
#=======================================

BSNT_02418___      1 TTGAATAAAGAAGCGCTAG-TCAATAGGCTGAATGCTTCAGCCAAAAGAC     49
                     |||||.||||||.|.||.| |.|| .||||||||||.||||||...||||
RBAM_014260__      1 TTGAACAAAGAAACACTGGCTGAA-CGGCTGAATGCATCAGCCGGCAGAC     49

BSNT_02418___     50 AAAAAGCTGATATCGTCATTAAAAACGGAAAAATCATGGACGTATATAAT     99
                     |||||||.||||.|||||||||||||||||||||||||||.||||.|||.
RBAM_014260__     50 AAAAAGCCGATACCGTCATTAAAAACGGAAAAATCATGGATGTATTTAAC     99

BSNT_02418___    100 CAAGAATGGATATATGAAGATATTGCGATTACAGATGGAGTTATTGTAGG    149
                     ||.||||||||.|.||.||||||.||.|||||.|..|||||.||.||.||
RBAM_014260__    100 CAGGAATGGATTTCTGCAGATATCGCCATTACGGGCGGAGTGATCGTCGG    149

BSNT_02418___    150 CCTCGGTGAGTATGAAGGCGAAAATATCATTGATGCAGAGGGACAAATGA    199
                     .||.||.||.||||||||.|||.|..|||||||||||||.||.|||||||
RBAM_014260__    150 GCTGGGCGAATATGAAGGGGAAGAAGTCATTGATGCAGAAGGTCAAATGA    199

BSNT_02418___    200 TTGTTCCGGGTTTTATTGATGGACATGTACATATTGAGTCGTCAATGGTT    249
                     |.||||||||.||||||||.||||||||.|||||.|||||.||.||||||
RBAM_014260__    200 TCGTTCCGGGCTTTATTGACGGACATGTTCATATCGAGTCCTCTATGGTT    249

BSNT_02418___    250 ACACCGATTGAGTTCGCTAAAGCAGTGTTGCCTCATGGCGTGACGACGGT    299
                     ||.||||||||.||.||||||||.||..|.||.||.||.|||||.||.||
RBAM_014260__    250 ACTCCGATTGAATTTGCTAAAGCCGTCCTCCCACACGGAGTGACTACTGT    299

BSNT_02418___    300 TGTTACAGATCCGCATGAAATCGCGAATGTGTCTGGTGAAAAAGGGATTG    349
                     ..||||.|||||.||.|||||.|||||.||.||.||.|.||||||.|||.
RBAM_014260__    300 CATTACTGATCCTCACGAAATTGCGAACGTTTCCGGAGCAAAAGGCATTT    349

BSNT_02418___    350 TGTTTATGATTGAACAAGCTCGGCATA---CACCGCTGAATATCCATTTT    396
                     ..||||||||.||.||.||   |.|.|   |.||||||||.||||.|||.
RBAM_014260__    350 CTTTTATGATAGAGCAGGC---GAAAAAGGCGCCGCTGAACATCCGTTTC    396

BSNT_02418___    397 ATGCTTCCTTCCAGTGTGCCTGCCGCAAGTTTTGAGCGATCAGGCGCAAT    446
                     ||||||||||||.||||.||.|||||.||.|||||.||.|||||.||..|
RBAM_014260__    397 ATGCTTCCTTCCTGTGTTCCCGCCGCTAGCTTTGAACGCTCAGGAGCCGT    446

BSNT_02418___    447 TCTCAAAGCTGCCGATCTCAAGCCTTTTTAT--GGAGAAGAAGAAGTATT    494
                     ..|.|||||.|..|||.|.||||||||||||  |||||  ||||.||..|
RBAM_014260__    447 ATTAAAAGCCGAGGATTTAAAGCCTTTTTATCAGGAGA--AAGAGGTGCT    494

BSNT_02418___    495 AGGGCTGGCTGAAGTTATGGATTATGTGTCGGTT-CAGCAGGCTGAAGAA    543
                     .||.||.||.|||||.||||||||||||||.||| |.|.||| ||||||.
RBAM_014260__    495 CGGACTTGCGGAAGTAATGGATTATGTGTCTGTTGCGGAAGG-TGAAGAG    543

BSNT_02418___    544 GACATGGTTCAGAAACTGCTCGATGCC---CGTGTGGCA-GGAAAAAGGA    589
                     ||.|||.|||||||||||||.||||||   |||    || ||||||.|||
RBAM_014260__    544 GATATGCTTCAGAAACTGCTTGATGCCAAGCGT----CACGGAAAACGGA    589

BSNT_02418___    590 TAGACGGTCATTTAGCTGGTTTATCAACAGACCTCATTAACATTTACAGA    639
                     |.|||||.||||||||.||..|.||..||||..||||.||.||.||||||
RBAM_014260__    590 TCGACGGGCATTTAGCCGGACTGTCTTCAGATATCATCAATATATACAGA    639

BSNT_02418___    640 ACCGCCTTTGTCTTAAACGACCATGAAGTAACATCGAAGGAAGAAGCCCT    689
                     |||||..|.||.|.|||.||.||||||||.||..|.||.||||||||.||
RBAM_014260__    640 ACCGCAATGGTGTCAAATGATCATGAAGTGACGACAAAAGAAGAAGCGCT    689

BSNT_02418___    690 TAATCGTATCAGAAGAGGCATGTATGTCATGATGCGTGAAGGATCAGTCG    739
                     ..|..|.||||||.|.||.||||||||||||.||||.||||||||.||.|
RBAM_014260__    690 GGACAGAATCAGACGGGGAATGTATGTCATGCTGCGCGAAGGATCGGTGG    739

BSNT_02418___    740 CCAAAAACACGCTCAATGTGCTTCCGGCGGTGAATGAAAAGAACGCACGC    789
                     |.|||||.||||||||||||||.|||||||||||||||||.|||||.||.
RBAM_014260__    740 CAAAAAATACGCTCAATGTGCTGCCGGCGGTGAATGAAAAAAACGCGCGG    789

BSNT_02418___    790 CGTTTCTTTTTTTGTACGGATGATAAGCATGTGGATGATTTATTGTCAGA    839
                     ||.||.||.|||||.|||||||||||||||||.||||||.|..|.|||||
RBAM_014260__    790 CGCTTTTTCTTTTGCACGGATGATAAGCATGTAGATGATCTGCTTTCAGA    839

BSNT_02418___    840 GGGAAGTGTAAACCATCAGGTGAAAATGGCGATTCAAGCTGGACTTGATC    889
                     .||||||||.|||||.||.||.|||||||||||..|.||.||||||||||
RBAM_014260__    840 AGGAAGTGTGAACCACCAAGTCAAAATGGCGATAAAGGCGGGACTTGATC    889

BSNT_02418___    890 CGTTTTTAGCCTATCAATTAGGAAGCCTCAATGCGGCCGAATGCTACGGA    939
                     |.||..|.||.|||||..|.|..||..|.||||||||.||.||||||||.
RBAM_014260__    890 CATTCCTTGCGTATCAGCTCGCCAGTTTAAATGCGGCTGAGTGCTACGGT    939

BSNT_02418___    940 TTAGATACAAAGGGAGCGATTGCCCCGGGTTATGACGCTGATTTACTCTT    989
                     .|.||.|||||.||.|||.|.||.|||||||.||||||.|||.|.||.||
RBAM_014260__    940 CTTGAAACAAAAGGGGCGGTAGCGCCGGGTTTTGACGCAGATCTGCTGTT    989

BSNT_02418___    990 TGTATCTGATTT---GGAAAATGTCACTGTCACAATGACGATGGTAAAAG   1036
                     |.|.||.|||.|   |||...||||   |||||.|.|||.|||||....|
RBAM_014260__    990 TATTTCAGATGTACGGGAGGCTGTC---GTCACGAAGACCATGGTCGCCG   1036

BSNT_02418___   1037 GGCAGACTGTTGCTGA----AGACAGCAAAGCGGTCTATCAGGATCA-TG   1081
                     |.|.|||.|||||.||    .||| |||   ||||.|||   ||.|| | 
RBAM_014260__   1037 GCCGGACCGTTGCCGAGAACGGAC-GCA---CGGTTTAT---GAACAGT-   1078

BSNT_02418___   1082 CTTCAACTGCAG---------CACCAGATCAGGCACTGCTTGATTCTGTT   1122
                           ||||.|         |.||.||.|||||.|||.|.|||.|.|  
RBAM_014260__   1079 ------CTGCCGGTTCCTATTCGCCGGACCAGGCGCTGTTGGATACAG--   1120

BSNT_02418___   1123 AAGCTTGCTGCT-------CCTCTTAACAAACAGGATTTTCATATGCCAA   1165
                          |||.|||       ||.||.|...||..||||||||||||    |
RBAM_014260__   1121 -----TGCGGCTGAAAGCGCCGCTGACTGAATCGGATTTTCATAT----A   1161

BSNT_02418___   1166 TCGATTC-AGAG---CAGCAAATCAATGTCATTCAAATCATACCAAATCA   1211
                     .|||||| ||||   .||.||||.|||||.||..||||.|||||.|||||
RBAM_014260__   1162 CCGATTCAAGAGGGTAAGAAAATGAATGTAATCGAAATGATACCGAATCA   1211

BSNT_02418___   1212 GCTTGAAACAAGATTAGTACAAGTTCCGGCTC---CTGATGCCCGCGAAT   1258
                     ..|.||.||.|||..|..|.||||.||.||.|   |||.|| .||||  |
RBAM_014260__   1212 TTTGGAGACGAGAAAAAAAGAAGTGCCTGCACCGTCTGCTG-ACGCG--T   1258

BSNT_02418___   1259 TTGAGCCTGACACTGAGTTTGATTTGTTAAAGATTGCAGTTGTCGAGCGG   1308
                     ||...|||||.||.||...||||||.|||||.||.||.||.|..||||||
RBAM_014260__   1259 TTTGTCCTGATACAGAAAATGATTTATTAAAAATCGCCGTCGCAGAGCGG   1308

BSNT_02418___   1309 CATAAAGGATTGAAAGAA--ACCGGACTTGGTGTTGTGAAAGGTTTTGGA   1356
                     ||.|..||  .||||.||  |..|||||.||..||||..||||.||.||.
RBAM_014260__   1309 CACAGCGG--CGAAAAAATGATAGGACTCGGGATTGTACAAGGGTTCGGG   1356

BSNT_02418___   1357 TTCAAGAG-CGGAGCGATTGCCACAACCATTTCACACGACTCCCATAATA   1405
                     || ||.|| .||.||.||.||||||||||||||.|||||.||||||||||
RBAM_014260__   1357 TT-AAAAGAAGGCGCCATCGCCACAACCATTTCTCACGATTCCCATAATA   1405

BSNT_02418___   1406 TTATTGCTGTCGGAACGAATGATGAGGATATCGCGGCGGCAGTTAATAAG   1455
                     |.||.||.|||||.||.||.||||..|||.|.||....|||.|.||.|.|
RBAM_014260__   1406 TCATCGCCGTCGGTACAAACGATGCCGATTTGGCAAAAGCAATCAACAGG   1455

BSNT_02418___   1456 CTGCAGGAAATTGGCGGAGGATTAACGATTATAAAAAATGGGGAAGAGCT   1505
                     ||.|..||.|..||.|||||||||||...|.|.|||||.||.|||..|||
RBAM_014260__   1456 CTCCGTGACACCGGAGGAGGATTAACAGCTGTGAAAAACGGAGAATTGCT   1505

BSNT_02418___   1506 CCATTCAGTACCGTTGCCGATTGCAGGGTTATTATCCGACCAATCTGCAG   1555
                     .||.||.||.|||.|.|||||.||.|||.|.||.||.||..|.||.||.|
RBAM_014260__   1506 TCACTCCGTTCCGCTTCCGATCGCCGGGCTTTTGTCTGATAAGTCGGCGG   1555

BSNT_02418___   1556 AGCAAGTGAATCAAAGCTTGCTGAC--GCTTCATGATAAATTGCCGTTAA   1603
                     |....||.|||.|.||||||  |.|  |||||||||.||..|.||..|..
RBAM_014260__   1556 AATGGGTCAATGACAGCTTG--GGCGTGCTTCATGAAAAGCTTCCTCTGC   1603

BSNT_02418___   1604 TCGGTTTCACAGGCGGATTT-AATCCATTTTTGACATTGTCGTTTTTAGC   1652
                     ||||.|||||.|| .||||| |||||.|||.|.|||||.|||||||||||
RBAM_014260__   1604 TCGGATTCACCGG-TGATTTCAATCCGTTTCTCACATTATCGTTTTTAGC   1652

BSNT_02418___   1653 TTTGCCTGTCATTCCTGATATTAAAATGACGACTACGGGATTATTCGATG   1702
                     ..|.||.||.|||||.||||||||||||||..|..|.||..|.||.||||
RBAM_014260__   1653 GCTTCCGGTGATTCCGGATATTAAAATGACAGCAGCCGGTCTGTTTGATG   1702

BSNT_02418___   1703 TAAAATCATTTCAACACATATCACTGCAATAA   1734
                     |.|||.|.|||||.||.||..|.|||||||||
RBAM_014260__   1703 TCAAAGCCTTTCAGCATATTCCGCTGCAATAA   1734


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