Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02415 and RBAM_014240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:08
# Commandline: needle
# -asequence dna-align/BSNT_02415___ykqA.1.9828.seq
# -bsequence dna-align/RBAM_014240___ykqA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02415___ykqA-RBAM_014240___ykqA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02415___ykqA-RBAM_014240___ykqA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02415___ykqA
# 2: RBAM_014240___ykqA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 925
# Identity: 555/925 (60.0%)
# Similarity: 555/925 (60.0%)
# Gaps: 188/925 (20.3%)
# Score: 1529.0
#
#
#=======================================
BSNT_02415___ 1 GTGAACTCGCTTCTGTTTGTATACGGGACATTAAGAAAGCATGAAAAAAA 50
|.||||||.||||.||||||....|||.|.||||.||||.||||
RBAM_014240__ 1 ------TTGCTTCTTTTTGCATACGGTTTGTTACGGAAGCGTGAAGAAAA 44
BSNT_02415___ 51 CCATCATTTGCT----GGCACAATCGGCATGTAT-CAATGAGCAGG-CGA 94
||||.|..|||| |||.| ||.|..|||.| | ||||||| ||.
RBAM_014240__ 45 CCATGAACTGCTGAAAGGCGC--TCCGTGTGTGTGC---GAGCAGGCCGC 89
BSNT_02415___ 95 GAACAAAGG-GAAGTTTGTTTGCTGCA--------AAAGAGGT--GCCCA 133
||..||.|| | |||||.| |.|.|||| |||..
RBAM_014240__ 90 GATAAACGGCG---------TGCTGTACGAAACGGATAAAGGTCAGCCTG 130
BSNT_02415___ 134 CAGCTGTTTTCAATGATGAAGATGAAGGCTATATATATGGCGAAGTATAT 183
|.|| ||.||.| |.|||...||..|.|.|.||.||.|||.|.|||
RBAM_014240__ 131 CGGC-GTCTTTA-----GCAGAAACAGCTTTTGTGTACGGGGAATTGTAT 174
BSNT_02415___ 184 GAAGCAGAT-----GAATTGTGTATACATAAGCTCGATCAATTTTTTCAA 228
|||.||||| || || ||.|.||||||.|||...|.||
RBAM_014240__ 175 GAAACAGATCATCAGA----TG-ATCCGTAAGCTGGATGCGTATT----- 214
BSNT_02415___ 229 GGATATCATAAACAAACGGTG--TTTG-TAGAA----------------- 258
|||.|| |||| |.|||
RBAM_014240__ 215 ---------------ACGCTGATTTTGATCGAAAAGAGGTTGCCGTGACG 249
BSNT_02415___ 259 ACGGATGTCGGGATTAAAA-----TTGCGCTTATTTATTTTATGAACAAA 303
|||||||.|||||.||||| || |||.|||.|..| |||
RBAM_014240__ 250 ACGGATGCCGGGAATAAAACCGCCTT-CGCATATGTCGT--------AAA 290
BSNT_02415___ 304 ----GACGGGTGTGCCGGTTT------TACGAAAATAAGCAGCGGCGACT 343
|||..|||||||...|| ||..||| |||||.||||
RBAM_014240__ 291 GCCCGACCAGTGTGCCTCATTCAACCGTATCAAA------AGCGGAGACT 334
BSNT_02415___ 344 GGAAAGAACATC----------------AGATGATCAGCAAATCGAAAAA 377
||||||||.|.| .||||| |||
RBAM_014240__ 335 GGAAAGAATACCGTTTTATGAAACGGGAGGATGA-CAG------------ 371
BSNT_02415___ 378 TCCCATTTATTATTTTGCCTATGGATCATGCATGGATAATGCCCGCTTTC 427
|||..||||||||||.||.||.||.||.||.|||||.||||||||.|||.
RBAM_014240__ 372 TCCGGTTTATTATTTCGCTTACGGCTCCTGTATGGACAATGCCCGGTTTA 421
BSNT_02415___ 428 AAAAAGCGGGAGTCGATCACTATTTTCAAGATCCAGTAGGAAGAGCTGTT 477
||.|.|||||.|||||.||||.||||...||.||.||.|||.|.||.|||
RBAM_014240__ 422 AACAGGCGGGGGTCGACCACTTTTTTGCCGAGCCGGTCGGAGGGGCGGTT 471
BSNT_02415___ 478 TTAAAAGGATACACAACCCGCTTCACGCTAAAAAGGG----AAGACGGTT 523
.|..||||.||..|.||..|.|||||..||| || ..|||||||
RBAM_014240__ 472 GTTGAAGGGTATTCGACGAGATTCACATTAA----GGCGTCCTGACGGTT 517
BSNT_02415___ 524 CAAGAGCGGA-CATGTTGGAAGACGGAGGAACAACAGAAGGCGTTTTATA 572
|.|||||.|| |.|||| ||||||||.|||..|||.||||||||..|.||
RBAM_014240__ 518 CCAGAGCCGATCTTGTT-GAAGACGGGGGACGAACTGAAGGCGTGCTGTA 566
BSNT_02415___ 573 CCGTATCCCTTATT----CTGCTCTCTCCTATCTATATAAAAGGGAGGGC 618
|....||||.| || |.|| ..|||||||.||.|||||.||.||.
RBAM_014240__ 567 CAAGCTCCCGT-TTGAAGCGGC---AACCTATCTGTACAAAAGAGAAGGT 612
BSNT_02415___ 619 GTCG--AATCTCTTACGTATCGGCCGGCATTTGTAGACGT-TGAAGCTGG 665
||.| ||.|.| ||.||.||.||.||.||..||||.|| || .||.||
RBAM_014240__ 613 GTTGATAACCAC--ACATACCGTCCCGCGTTCATAGAAGTGTG-TGCCGG 659
BSNT_02415___ 666 CGGAAG-GCACTACAAAGACTGT-TTAACCTTTCTCGTCCTCCAAAAAGA 713
|||..| |.| ||||.||.| || .|.||.||||||||.||..|.||||.
RBAM_014240__ 660 CGGCCGTGTA-TACAGAGGC-GTCCTGACGTTTCTCGTTCTTGATAAAGC 707
BSNT_02415___ 714 AGCGGAAATTGCCCCGCCTCAG---CACTATCAGATTGAAATCGAACGCG 760
.|.|||||||| ||||||.| |||||||||...|||||||||||||
RBAM_014240__ 708 TGAGGAAATTG---CGCCTCCGGGTCACTATCAGGAAGAAATCGAACGCG 754
BSNT_02415___ 761 GAGCGGAGCTGTATTTGTCGCCTGAGTTTACTGAAAAGCTCAAGCGGCAT 810
|||||||.||||||||.|||||.|..|||.|.||||||||.||.||..||
RBAM_014240__ 755 GAGCGGACCTGTATTTATCGCCCGCCTTTTCAGAAAAGCTTAAACGCTAT 804
BSNT_02415___ 811 ATGAATTCGCTGCC-AAAAGGATAA 834
|||||.||..|||| ||||.|..|
RBAM_014240__ 805 ATGAACTCATTGCCGAAAATGTGA- 828
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