Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02405 and RBAM_014160

See Amino acid alignment / Visit BSNT_02405 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:07
# Commandline: needle
#    -asequence dna-align/BSNT_02405___ykoA.1.9828.seq
#    -bsequence dna-align/RBAM_014160___ykoA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02405___ykoA-RBAM_014160___ykoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02405___ykoA-RBAM_014160___ykoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02405___ykoA
# 2: RBAM_014160___ykoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 272
# Identity:     205/272 (75.4%)
# Similarity:   205/272 (75.4%)
# Gaps:           4/272 ( 1.5%)
# Score: 733.0
# 
#
#=======================================

BSNT_02405___      1 TTGAGGCTTTTAACACTTACTGAATATTG-CTTACTGATCTTTTTTA-CG     48
                     ||||.||||||||||||.||.|||||||| |||| ||||.||.|||| ||
RBAM_014160__      1 TTGAAGCTTTTAACACTCACAGAATATTGTCTTA-TGATTTTCTTTACCG     49

BSNT_02405___     49 GGCTTTTACCTTGCCGTAACAGGCTTTACCGCCAAAGATATCGGCTTATA     98
                     ||.|||| .||.|||||.||||||||||||||....||.||||||||.||
RBAM_014160__     50 GGATTTT-TCTGGCCGTCACAGGCTTTACCGCACGTGACATCGGCTTGTA     98

BSNT_02405___     99 TATAGGCATAGCCCTTATTTACATATTTTCGCACATTTTTTCTAAACGGC    148
                     ..|.||.||.|||||.|||||||..||||||||..|.|||||.||||||.
RBAM_014160__     99 CGTCGGAATCGCCCTCATTTACACGTTTTCGCATCTCTTTTCAAAACGGA    148

BSNT_02405___    149 TTTTAGAAAAGCGCGGAAAAGAGAACAAACAGGTTCACCTTTTCTTCAGT    198
                     |..|.|||||.|||||.||||||||..|.|||||..|.|||||.|||||.
RBAM_014160__    149 TGCTTGAAAAACGCGGCAAAGAGAAGCAGCAGGTGAATCTTTTTTTCAGC    198

BSNT_02405___    199 GTGCTAGCTATTATCGGTTCAGTGTTCATCACGGTTTTATGCATTGCATT    248
                     ||.||.||.|||.||||.||||||.|...||||||..|.|.|||.||..|
RBAM_014160__    199 GTTCTGGCCATTGTCGGATCAGTGCTGGCCACGGTAATGTTCATCGCCGT    248

BSNT_02405___    249 GGTCGCTTCTTTTTCAAAATAA    270
                     .|.|||.||.|||.|.||||||
RBAM_014160__    249 CGCCGCCTCGTTTGCCAAATAA    270


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