Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02400 and RBAM_014120

See Amino acid alignment / Visit BSNT_02400 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:07
# Commandline: needle
#    -asequence dna-align/BSNT_02400___fruR.1.9828.seq
#    -bsequence dna-align/RBAM_014120___fruR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02400___fruR-RBAM_014120___fruR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02400___fruR-RBAM_014120___fruR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02400___fruR
# 2: RBAM_014120___fruR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 759
# Identity:     609/759 (80.2%)
# Similarity:   609/759 (80.2%)
# Gaps:           6/759 ( 0.8%)
# Score: 2428.0
# 
#
#=======================================

BSNT_02400___      1 ATGCTAACTCCTGAACGGCATCAATTGATTATTGATCAAATAGAAAAGCA     50
                     |||||.|||||||||.||.||||..|||||||.|||||.||.|||||||.
RBAM_014120__      1 ATGCTCACTCCTGAAAGGTATCAGCTGATTATGGATCAGATTGAAAAGCG     50

BSNT_02400___     51 TGATGTGGTAAAGATTCAAGAGCTTATAAATCTGACTAATGCTTCTGAAT    100
                     |||||||||.||||||||||||||.||||...||||.|||||||||||||
RBAM_014120__     51 TGATGTGGTGAAGATTCAAGAGCTGATAAGCATGACAAATGCTTCTGAAT    100

BSNT_02400___    101 CAACAATCAGAAGAGATTTATCGACCCTTGAAGAACGCGGTTTTTTAAAG    150
                     ||||.|||||||||||||||||.||.||||||||.|||||.|||||||||
RBAM_014120__    101 CAACGATCAGAAGAGATTTATCAACACTTGAAGAGCGCGGATTTTTAAAG    150

BSNT_02400___    151 CGCGTTCATGGTGGAGCGGCCAAGCTTTCCGATATCAGACTTGAACCCGA    200
                     ||||||||.||.||.|||.|.||.||||||.|.|.|||.|..||||||||
RBAM_014120__    151 CGCGTTCACGGCGGGGCGTCTAAACTTTCCAACAGCAGGCAAGAACCCGA    200

BSNT_02400___    201 TATGCTTGAAAAATCATCCAAAAACCTTCACGATAAATTGAAAATTGCTG    250
                     |||||||||||||||.||||||||||||||.||||||.||||.||.||.|
RBAM_014120__    201 TATGCTTGAAAAATCCTCCAAAAACCTTCAGGATAAACTGAAGATCGCAG    250

BSNT_02400___    251 AAAAAGCAGCTTTTCTTTTAGAAGAAGGGGATTGCATTTACCTTGATGCA    300
                     ||.||||.||.|.|.|.|||||||||||.||.||.|||||.||||||||.
RBAM_014120__    251 AAGAAGCGGCATCTTTATTAGAAGAAGGTGACTGTATTTATCTTGATGCG    300

BSNT_02400___    301 GGCACGACGACATTGCACATGATTGATTTTATGGATAAAACCAAAGATAT    350
                     ||.||.||.|||||||||||||||||||||||.|||..|.|.||.||.||
RBAM_014120__    301 GGAACAACTACATTGCACATGATTGATTTTATAGATCCATCTAAGGACAT    350

BSNT_02400___    351 TGTCGTTGTCACAAACGGGGTGATGCATATCGATGCATTAATAAGGAAAG    400
                     |||.||||||||||||||.||.|||||||||||.||.|||||||||||||
RBAM_014120__    351 TGTGGTTGTCACAAACGGAGTTATGCATATCGACGCTTTAATAAGGAAAG    400

BSNT_02400___    401 AAATTTCTTTTTATCTGCTTGGAGGATACGTAAAGCACAGAACGGGCGCG    450
                     ..||..|.||||||||.||.||||||||.||.|||||.|||||.||.|||
RBAM_014120__    401 GGATCCCCTTTTATCTTCTCGGAGGATATGTGAAGCATAGAACAGGTGCG    450

BSNT_02400___    451 ATTATTGGAGGCGCTTCACTGATTGCCATGGACCAGTACAGATTTGACAA    500
                     ||.||.||.|||||.|||.|.|..||..|...|||||||.|.||||||||
RBAM_014120__    451 ATGATCGGCGGCGCCTCATTAACGGCGGTCAGCCAGTACCGTTTTGACAA    500

BSNT_02400___    501 GAGTTTTCTGGGGACAAACGGTGTCCATACAGAGGCTGGATTCACAACGC    550
                     .||.||.||.|||...|||||.||.||.|..||.||.||.||.|||||.|
RBAM_014120__    501 AAGCTTCCTCGGGGTGAACGGCGTGCACATTGAAGCCGGCTTTACAACAC    550

BSNT_02400___    551 CGGACCCTGATGAAGCCCTT-TTAAAACAGAAAGCGATCAAACAGGCAAA    599
                     |.||.||.|||||.||.||| |.||.||| ||.||..|.|.||||||.||
RBAM_014120__    551 CCGATCCGGATGAGGCTCTTCTGAAGACA-AAGGCTGTGAGACAGGCGAA    599

BSNT_02400___    600 ACACGCTTACGTCTTAGCAGACCCTTCGAAGTTCGGAGAAATTTCATTTT    649
                     |.|.||.||.||.|||||.||.|||||.||.|||||.||.|||||  |||
RBAM_014120__    600 AAATGCGTATGTTTTAGCCGATCCTTCTAAATTCGGCGAGATTTC--TTT    647

BSNT_02400___    650 CG--GCATTCGCCGCAATAGGCGACGCAACAATCATTACGACTGACGCTG    697
                     ||  ||.||||||||..|.|||||.||..|.||||||||.|||||.||||
RBAM_014120__    648 CGCAGCGTTCGCCGCCTTGGGCGATGCCGCTATCATTACCACTGAAGCTG    697

BSNT_02400___    698 AAGAGCTTACATTCGATAATTACCAAGAAAAAACTGTCGTAAAGGTAGTG    747
                     ||||.|||.|||||||||||||||||||||||||||||||||||||||||
RBAM_014120__    698 AAGAACTTGCATTCGATAATTACCAAGAAAAAACTGTCGTAAAGGTAGTG    747

BSNT_02400___    748 AAACCATGA    756
                     |||||||||
RBAM_014120__    748 AAACCATGA    756


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.