Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02396 and RBAM_014080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_02396___yknW.1.9828.seq
# -bsequence dna-align/RBAM_014080___yknW.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02396___yknW-RBAM_014080___yknW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02396___yknW-RBAM_014080___yknW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02396___yknW
# 2: RBAM_014080___yknW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity: 467/776 (60.2%)
# Similarity: 467/776 (60.2%)
# Gaps: 157/776 (20.2%)
# Score: 1249.5
#
#
#=======================================
BSNT_02396___ 1 ATGGAAACGAATGTAGAAAAAAACAGCGGA-ACGGC---GACTGAAAAGC 46
||||||.|.||..|.||||||..|| | ||||| .||.|||||||
RBAM_014080__ 1 ATGGAACCAAACCTGGAAAAAGGCA----ATACGGCAGTAACGGAAAAGC 46
BSNT_02396___ 47 CTTCACTTTTCGGAGTAATCACAAGTCC-GTCCGTTCAATTTGAAAGAAT 95
|.|||.|||||||.||.||.|||||||| || .||.||.|||.|||||.|
RBAM_014080__ 47 CGTCAATTTTCGGCGTCATTACAAGTCCTGT-TGTGCAGTTTAAAAGATT 95
BSNT_02396___ 96 AAGAGAAAGGCCGGCTGT-ATGGGGA--CCGCTTTTGATTGTTGCAGCAA 142
||.|||||.|||| || ||.||.| ||.||..||||||| ||.| |
RBAM_014080__ 96 AAAAGAAAAGCCG---GTCATCGGCATTCCTCTCCTGATTGT--CATC-A 139
BSNT_02396___ 143 TTATCATCGTCGGTGCCGTGC-------TGCAATCACTCGGTACGGATTA 185
||.|||||| || |||| || |||....|||.||.|.|.||||
RBAM_014080__ 140 TTCTCATCG-CG--GCCG-GCAGTATTTTGCGCGGACTGGGGATGAATTA 185
BSNT_02396___ 186 T-----AGTGAGCTTTTGAAAAGCCAGGATACGCAAGGGCTATCT----- 225
| |||| .||||.|||| || |.|||
RBAM_014080__ 186 TGAAGAAGTG-----CTGAACAGCC--------CA-----TCTCTTGACG 217
BSNT_02396___ 226 --------GCTGAACAAATGGAAACTGTCGCAACAATAACCAAATTTGGC 267
|.|||.||.||.|||| || ||.|.|||| ||.||
RBAM_014080__ 218 GTTTGACGGATGATCAGATTGAAA-TG-----ACCAAAACC----TTCGC 257
BSNT_02396___ 268 GGAAT--GGCAGGCGCTATTATCGGCGGTATC----GCAGCATTA----- 306
..||| |||| |.||..||||.||.||| |..||||||
RBAM_014080__ 258 TAAATTCGGCA----CGATGTTCGGAGGAATCTTCGGGGGCATTATCGCT 303
BSNT_02396___ 307 ---TTTATTGCCCCTCTTATTTATTGGCTCTGTGTAAAAATATCAGGCGG 353
|||||.|..||.||.|||||.|||||.||.||.|||||.||||||||
RBAM_014080__ 304 CTGTTTATCGTTCCGCTCATTTACTGGCTGTGCGTCAAAATTTCAGGCGG 353
BSNT_02396___ 354 AGTTACGACATATAAAAAAATGCTTTCTCTCGGTCTGTTTGTCTCTTTAA 403
.||.||.||.||.|||||||||||.||.|||.|.||||||....|.||.|
RBAM_014080__ 354 CGTGACAACTTACAAAAAAATGCTATCACTCAGCCTGTTTACGGCATTTA 403
BSNT_02396___ 404 TTAGCAGTCTCGGATTATTGGTTAATGGAATCGT---TGCTTTTACGACT 450
|||.||.|.||||.|||....||||.||..|.|| |..||||||...|
RBAM_014080__ 404 TTACCAATATCGGCTTAGCTATTAACGGTCTTGTCACTTATTTTACCGGT 453
BSNT_02396___ 451 GACGTGAATCCTCTTTACAGCACGACGTCAC-----TGGCAGGGATTATC 495
| ||.| ||| ||.|.|||.|||.|| |||| ||.|.||
RBAM_014080__ 454 G-CGGG----CTC---ACTGTACGCCGTTACATCTTTGGC---GAGTGTC 492
BSNT_02396___ 496 CCATCTGACGG----GGC-TCTTGCCAGCG----TGTTAAATACCTTTGA 536
..|.|.|.||| ||| || ||| |.||||...|.||.||
RBAM_014080__ 493 ATACCGGCCGGAGACGGCGTC------GCGGTCTTTTTAAGCGCGTTCGA 536
BSNT_02396___ 537 AATTTTCAGCATCTGGAGCTTTGTATTAT--TAGCAATCGGACTTCACAA 584
.|||||||||||||||||| |.||||.| |.||..|.|||||||.|.|
RBAM_014080__ 537 CATTTTCAGCATCTGGAGC--TATATTCTGCTCGCTTTGGGACTTCGCTA 584
BSNT_02396___ 585 AACGGGAGGCATCTCCAAAAAAGCCGGGTGGATTTCAGCAATCATTCTAT 634
.||.||.|||||.||.||||||||.|..||||.|||.||.||..|.||.|
RBAM_014080__ 585 TACAGGCGGCATTTCGAAAAAAGCGGCCTGGACTTCCGCGATTGTCCTGT 634
BSNT_02396___ 635 TCGGAATTTTAGTTGTATTTTCG------------CTTTTTTCAGGTTTA 672
|.|..|||.|..||.||.||||| ||.|| |.|||.|
RBAM_014080__ 635 TTGTTATTATGCTTTTAGTTTCGGCAGTCGGAGGACTGTT---AAGTTCA 681
BSNT_02396___ 673 AT--CAATTCTGTGGCGGGTGCATAA 696
|| || ||.||||.||||
RBAM_014080__ 682 ATGACA--------GCAGGTGTATAA 699
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