Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02380 and RBAM_014010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_02380___yknT.1.9828.seq
# -bsequence dna-align/RBAM_014010___yknT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02380___yknT-RBAM_014010___yknT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02380___yknT-RBAM_014010___yknT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02380___yknT
# 2: RBAM_014010___yknT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1096
# Identity: 684/1096 (62.4%)
# Similarity: 684/1096 (62.4%)
# Gaps: 233/1096 (21.3%)
# Score: 2186.0
#
#
#=======================================
BSNT_02380___ 1 ATGAAAAGATCAGGTCCTTTTTTCCACGACGTGTCTCAGGAGAACCTTTA 50
|||||||.|||.|||||.||||||||||||...|||||.|||||||||||
RBAM_014010__ 1 ATGAAAATATCCGGTCCGTTTTTCCACGACACTTCTCAAGAGAACCTTTA 50
BSNT_02380___ 51 TTTAAAATCCGAGCTTTCAAGGTGCCATAAGCTGATTGCTGAACTTGAAG 100
.||.||||||||.|||||.||.|||...||..|.|||.|.|||.||||||
RBAM_014010__ 51 CTTGAAATCCGAACTTTCCAGATGCAGAAAATTAATTTCAGAATTTGAAG 100
BSNT_02380___ 101 CAAGCTACTTTCATCAGAAAAATAACAAACTGCTCA--AAGAAAATACCG 148
||||||||||.||||||||||||||.||.|| ||| |.|||||..||.
RBAM_014010__ 101 CAAGCTACTTCCATCAGAAAAATAATAAGCT--TCAAGAGGAAAACGCCA 148
BSNT_02380___ 149 ATATGAAAGAAAAACTCCAGCAGCTGTCTGCCGAATT--AACACATATGT 196
||||.|||||....||.||..||||.||||.|||||| ||..|||...|
RBAM_014010__ 149 ATATTAAAGAGCGGCTTCACAAGCTTTCTGACGAATTGGAAGCCATGGCT 198
BSNT_02380___ 197 CAACAAAAGAAAAACATGCCTCCCACACCAGCCAA---ACCC-------- 235
|||.||.|.||| |||.||| ||.|
RBAM_014010__ 199 CAAAAACACAAA----------------CAGACAAGTGACACGGAACGTT 232
BSNT_02380___ 236 ---TGCACCAAATAAGAGCTGAACTGCTTGATAAAATCGTTGTTTTGCAG 282
||||..||||.|||||.|..|||||.|||||||||||..|||||||.
RBAM_014010__ 233 CTTTGCATGAAATCAGAGCCGGGCTGCTCGATAAAATCGTCATTTTGCAA 282
BSNT_02380___ 283 GAGCTTCTATCTGC-TGAAACCTTTAAACGCAGAGCCGAA-------ATC 324
||.||.|| ||.|| .|||||.||| || ||.||| ||.
RBAM_014010__ 283 GAACTGCT-TCAGCAGGAAACGTTT---CG----GCGGAAAAATGAGATG 324
BSNT_02380___ 325 GAAGAAAAACATAAACTTCATATTGCGAAAGTCAAAATCGAAGAAGAAAA 374
||||||||.||....||.|||.||.|.||.||.|||.|.|||||||||||
RBAM_014010__ 325 GAAGAAAAGCACCGTCTGCATCTTACAAATGTAAAATTTGAAGAAGAAAA 374
BSNT_02380___ 375 TAAAAATCTT-CATAAACGGATCAGCGAACTTCAAGCCTCGATTGAGCAG 423
|||||| ||| ||||..||.|||.||..||||.|..||.|.|||
RBAM_014010__ 375 TAAAAA-CTTACATACCCGCATCCGCTCACTTGAGACCGCCATT------ 417
BSNT_02380___ 424 GAACAAAATGCACTG----CTTCAGGCA------AAACAG------CAAG 457
||||.||.||.| | |||.|.| |||||| ||.|
RBAM_014010__ 418 ---CAAACTGAACGGACATC-TCACGAAGATATGAAACAGCGTTATCATG 463
BSNT_02380___ 458 CCGAATTGATAAAAGCCGAAAA---CGGGCGTCTAAAAAAGCAAATGGTA 504
||| .|| .||.|||||| |.||| ||.|||.| ||||||.||
RBAM_014010__ 464 CCG--CTG----CAGACGAAAATACCCGGC-TCCAAACA--CAAATGATA 504
BSNT_02380___ 505 GAAAAAGAATATCAGCTAAAACATATTAAAATAGAAGTTGATCATATGAA 554
|||||||||||.|||||.||||||||||||||||||.||.|||||||||.
RBAM_014010__ 505 GAAAAAGAATACCAGCTCAAACATATTAAAATAGAAATTAATCATATGAG 554
BSNT_02380___ 555 AGATCGAATCATAGAAACGAAAGAAAGACTGCTAGACATAGAAAAAACGA 604
|||||||||..|||||||.||||||.|.||..||||.|||||||||||||
RBAM_014010__ 555 AGATCGAATACTAGAAACAAAAGAACGGCTTGTAGAAATAGAAAAAACGA 604
BSNT_02380___ 605 AAGAAAAATTATTTCACGAAACTATTATATCGTATAAACGGCAGCTTGAT 654
|||||||.||||||||.|||||.|||.|.|||||||||||||||||.||.
RBAM_014010__ 605 AAGAAAAGTTATTTCAAGAAACCATTCTTTCGTATAAACGGCAGCTGGAC 654
BSNT_02380___ 655 GAAAGCGATGCCTGGATTGCTTCTCATTTTGCCGATATTGATGGCGGCAC 704
|||||.|||||.||||||||....||||||||.||||||||..||.||||
RBAM_014010__ 655 GAAAGTGATGCTTGGATTGCCGGCCATTTTGCTGATATTGACAGCCGCAC 704
BSNT_02380___ 705 GAAACAAAAAGAAAAAACGGAAGAAGAAGCT---------CCAGCGGTCT 745
| |...||.|||..|||.||||| ||..|.||.|
RBAM_014010__ 705 G---------GCGGAACCGGCGGAACAAGCTCTGGAAATCCCTTCTGTTT 745
BSNT_02380___ 746 ACGCGCAGCCAAA--------TCATGTAG-AGACTATCCTTGAAGATGTC 786
||||| |||.|.|| ||||| |.|||.|||..||.
RBAM_014010__ 746 --------CCAAAGAGACTGTTCAGGCAGAAGACT-TGCTTAAAGCCGTT 786
BSNT_02380___ 787 ACCAAACAGATACATGT-GCTTCAAAAACAGCTTG------------CCC 823
|||.|||| |..|||.| .||.||||||||..||| |||
RBAM_014010__ 787 ACCGAACA-AGTCATCTCCCTGCAAAAACAATTTGTACAATCAGAGTCCC 835
BSNT_02380___ 824 GCGCCCAATCATCAGACCAGGCCAAGAGCCATACAATCG-AAGAGCTGAA 872
||| ||||| ||| ..|| ||||
RBAM_014010__ 836 GCG-------ATCAG---------------------TCGTTTGA--TGAA 855
BSNT_02380___ 873 AAAC-AGAGCCGCTGAA----------------GAAAAGCCTTATCAAAA 905
|||| .||..||.|||| ||||||||||..|||||
RBAM_014010__ 856 AAACTGGATGCGTTGAAAGAACGTGCTGACGGCGAAAAGCCTTTCCAAAA 905
BSNT_02380___ 906 GTGGGTGTATAAG--CTTAATCTTGAAAAA-------GAAAACA-----A 941
|||.| .|.||.||||||||| |||||.| .
RBAM_014010__ 906 --------ATATGTCGTCAAGCTTGAAAAAAAGCCTGGAAAAGAGGCGTC 947
BSNT_02380___ 942 ACCTTCACAGAA-------AAAACCTCAATAA-------------- 966
||.|.|.||||| .|||.|.|||.||
RBAM_014010__ 948 ACTTCCGCAGAATAAGCGGGAAAGCGCAAAAAAACTGCTTGAGTAA 993
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