Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02367 and RBAM_013960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_02367___ykuR.1.9828.seq
# -bsequence dna-align/RBAM_013960___ykuR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02367___ykuR-RBAM_013960___ykuR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02367___ykuR-RBAM_013960___ykuR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02367___ykuR
# 2: RBAM_013960___ykuR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1139
# Identity: 886/1139 (77.8%)
# Similarity: 886/1139 (77.8%)
# Gaps: 28/1139 ( 2.5%)
# Score: 3411.5
#
#
#=======================================
BSNT_02367___ 1 ATGAAGAAAGAGGAGCTCATCGCAATTCGCAGAGATCTGCATCGTATACC 50
|||.|.||||||..||||||.||.||.||.|||||||||||.||.||.||
RBAM_013960__ 1 ATGGAAAAAGAGCGGCTCATTGCCATCCGAAGAGATCTGCACCGCATTCC 50
BSNT_02367___ 51 GGAGCTTGGATTTCAGGAGTTCAAAACCCAGCAGTATTTATTACATGTCT 100
||||.|.||.||||||||.|..||||||||.|||||..|..|..||.|.|
RBAM_013960__ 51 GGAGATCGGCTTTCAGGAATATAAAACCCAACAGTACCTGCTGAATCTAT 100
BSNT_02367___ 101 TGGAACAATATCCGCAAGACAGAATTGAAATTGAGAAATGGCGAACAGGG 150
||.|.|||||||||.|.||.|||||||||||.||.|..|||.||||.||.
RBAM_013960__ 101 TGAACCAATATCCGGAGGAAAGAATTGAAATCGAAACTTGGAGAACCGGC 150
BSNT_02367___ 151 CTTTTTGTAAAAGTGAACGGGACGGCGCCGGAAAAAATGCTGGCATACAG 200
.|.|||||.|||||.|||||.|||||.||||||||||||||.||.|||||
RBAM_013960__ 151 ATCTTTGTCAAAGTCAACGGCACGGCTCCGGAAAAAATGCTCGCCTACAG 200
BSNT_02367___ 201 AGCGGATATCGATGCGCTTTCTATAGAAGAGCAAACTGGTCTTCCATTCG 250
|||||||||.||.||.||.||.||.||||||||.||.||.|||||.||.|
RBAM_013960__ 201 AGCGGATATAGACGCTCTGTCGATTGAAGAGCAGACGGGGCTTCCGTTTG 250
BSNT_02367___ 251 CATCAGAGCATCACGGCAACATGCACGCCTGCGGTCACGATTTGCATATG 300
||||.||.||.|.|||....||||||||.|||||.||||||.||||.|||
RBAM_013960__ 251 CATCTGAACACCCCGGTTTTATGCACGCATGCGGCCACGATATGCACATG 300
BSNT_02367___ 301 ACAATTGCACTCGGCATTATTGATCATTTTGTTCACCACCCAGTCAAACA 350
||.||.||.|||||||||||||||||||||||.||.||.||.||||||||
RBAM_013960__ 301 ACCATCGCGCTCGGCATTATTGATCATTTTGTCCATCATCCCGTCAAACA 350
BSNT_02367___ 351 TGATTTGCTTTTTCTGTTTCAGCCGGCAGAGGAAGGGCCTGGCGGTGCGG 400
||||.|.||.|||.|.||.||||||||.||.|||||.||.|||||.||||
RBAM_013960__ 351 TGATCTTCTCTTTTTATTCCAGCCGGCTGAAGAAGGACCGGGCGGAGCGG 400
BSNT_02367___ 401 AACCAATGCTTGAGAGCGATGTATTAAAAAAATGGCAGCCTGATTTCATC 450
||||.||||||||.||||||||..|.|||||||||..|||.|||||.||.
RBAM_013960__ 401 AACCGATGCTTGAAAGCGATGTGCTGAAAAAATGGACGCCGGATTTGATT 450
BSNT_02367___ 451 ACTGCCCTTCATATTGCTCCAGAGCTTCCGGTAGGCACCATTGCGACAAA 500
||.||.||.|||||.||.||.||||||||.||||||||.||..|.||.||
RBAM_013960__ 451 ACCGCTCTCCATATAGCACCTGAGCTTCCTGTAGGCACAATCTCCACCAA 500
BSNT_02367___ 501 AAGCGGCCTTCTATTTGCGAATAC-ATCAGAGCTAGTCATCGATCTGGAA 549
||||||..|.||.|||||.||||| |.| |||||.|||||||||||.||.
RBAM_013960__ 501 AAGCGGATTGCTGTTTGCCAATACGAGC-GAGCTTGTCATCGATCTTGAG 549
BSNT_02367___ 550 GGCAAAGGGGGACATGCGGCATATCCGCATTTGGCTGAGGATATGGTTGT 599
||.|||||.||.||||||||||||||||||...||.||.||.|||||.||
RBAM_013960__ 550 GGGAAAGGCGGGCATGCGGCATATCCGCATACAGCAGACGACATGGTCGT 599
BSNT_02367___ 600 AGCAGCAAGTACACTTGTCACCCAGCTGCAAACGATTATCTCTAGAAACA 649
.||.||.||.||.||||||||.||||||||.|||.|.||.||.|||||.|
RBAM_013960__ 600 TGCCGCGAGCACGCTTGTCACGCAGCTGCAGACGGTCATATCCAGAAATA 649
BSNT_02367___ 650 CAGATCCGCTAGACAGTGCTGTTATTACAGTTGGTACCATTACCGGAGGC 699
|.||||||||.|||||.|||||.||.||.||.||.||.||||||||.|||
RBAM_013960__ 650 CGGATCCGCTTGACAGCGCTGTGATAACTGTCGGAACGATTACCGGGGGC 699
BSNT_02367___ 700 TCGGCACAAAATATCATTGCGGAAACGGCCCACCTGGAAGGCACGATCCG 749
.||||.|||||||||||.||.||....||.||.|||||.||.||.|||||
RBAM_013960__ 700 ACGGCGCAAAATATCATCGCAGAGCATGCTCATCTGGAGGGAACCATCCG 749
BSNT_02367___ 750 CACGCTTTCTGAAGAATC---------GATGAAACAAGTAAAGGAACGGA 790
.||||||||.||.||||| |.|||| |||| ||||
RBAM_013960__ 750 GACGCTTTCCGAGGAATCAATGCGTATGGTGAA------AAAG---CGGA 790
BSNT_02367___ 791 TTGAAGATGTAGTGAAAGGAATCGAAATCGGATTCCGCTGCAAAGGAAAA 840
|||||||..|.||.||||||||.||||||||.|||||.||||||||||||
RBAM_013960__ 791 TTGAAGAGCTTGTCAAAGGAATTGAAATCGGCTTCCGATGCAAAGGAAAA 840
BSNT_02367___ 841 GTGACATATCCGTCTGTCTATCACCAAGTTTACAATACGAGCGGATTAAC 890
||.||.||||||||.||.|||||.||||||||.|||||.|||||..|.||
RBAM_013960__ 841 GTCACGTATCCGTCCGTTTATCATCAAGTTTATAATACAAGCGGCCTGAC 890
BSNT_02367___ 891 AGAAGAATTTATGTCTTTTGT-TGCTGAACATCAACTGGC-GACTGTAAT 938
.||||||||||||...||||| .|| ||.|||||.||.|| ||| ||.|
RBAM_013960__ 891 CGAAGAATTTATGCAATTTGTCAGC-GATCATCAGCTTGCTGAC-GTGA- 937
BSNT_02367___ 939 TGAA--GCAAAAGAAGCAATGACTGGGGAGGATTTTGGCTATATGCTGAA 986
||| ||.||||||||.|||||.||.||.|||||.||.|||||||||||
RBAM_013960__ 938 -GAACGGCGAAAGAAGCGATGACCGGAGAAGATTTCGGATATATGCTGAA 986
BSNT_02367___ 987 AAAATATCCCGGCTTCATGTTCTGGCTCGGCGCTGATTCTGAACATGGGC 1036
|||||||||||||||.|||||||||||.||.||.|||||....||.||||
RBAM_013960__ 987 AAAATATCCCGGCTTTATGTTCTGGCTGGGGGCCGATTCATCCCACGGGC 1036
BSNT_02367___ 1037 TTCATCATGCTAAGCTGAATCCCGATGAAAATGCGATAGAAACAGCGGTT 1086
|||||||.||.||||||||.||.||||||.|||||||.|||||.|||||.
RBAM_013960__ 1037 TTCATCACGCCAAGCTGAACCCGGATGAAGATGCGATGGAAACCGCGGTC 1086
BSNT_02367___ 1087 AATGTCATGACAGGTTATTTTTCTGTTTATGCCAATTAA 1125
|||||||||...||.||||||||....||||||||||||
RBAM_013960__ 1087 AATGTCATGGTCGGATATTTTTCGAAGTATGCCAATTAA 1125
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