Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02363 and RBAM_013930

See Amino acid alignment / Visit BSNT_02363 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:05
# Commandline: needle
#    -asequence dna-align/BSNT_02363___ykuO.1.9828.seq
#    -bsequence dna-align/RBAM_013930___ykuO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02363___ykuO-RBAM_013930___ykuO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02363___ykuO-RBAM_013930___ykuO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02363___ykuO
# 2: RBAM_013930___ykuO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 950
# Identity:     624/950 (65.7%)
# Similarity:   624/950 (65.7%)
# Gaps:         112/950 (11.8%)
# Score: 1856.5
# 
#
#=======================================

BSNT_02363___      1 ATGTTTCATAAAGGGGCAACCGCTGTTACGGCATCGGCGTTTTCTGGATA     50
                     ||||||||||||||.||.||.|||||.|.||||||.|.|...||.|||||
RBAM_013930__      1 ATGTTTCATAAAGGCGCGACGGCTGTCATGGCATCAGTGACCTCAGGATA     50

BSNT_02363___     51 TTTTGTGGCGGTACAAAGA-GAAGGCATTTTTCATTACTCTTT----GGA     95
                     ||||||.||.|| .||||| |||||.||||||||||    |||    |||
RBAM_013930__     51 TTTTGTCGCAGT-GAAAGACGAAGGTATTTTTCATT----TTTCCGCGGA     95

BSNT_02363___     96 GCAGGGCTGGAGAAAG-CTTTTTCGTTTGAAAAGTAAGATACACTGTATC    144
                     ..|.||||||| |.|| ||.||.||..|||||||.|..||.|| |||   
RBAM_013930__     96 AGAAGGCTGGA-AGAGACTGTTCCGAGTGAAAAGCAGAATTCA-TGT---    140

BSNT_02363___    145 AGC-----TACATAGGGCCTTACTTATTTGGCGTTGGTGAAAAGGGAACA    189
                      ||     |||||||||||.|||.||||.|..|.|||.|||||.||..|.
RBAM_013930__    141 -GCTGACTTACATAGGGCCCTACATATTCGCGGCTGGAGAAAAAGGCGCC    189

BSNT_02363___    190 GTCATTCGTTCGGCTGATGAAGGGAAA-ACCTGGACGATGTCGAGCTTTC    238
                     |||.|..|.||.||.||| .||||||| |||||||||...||..|.||||
RBAM_013930__    190 GTCCTCAGATCAGCCGAT-CAGGGAAAGACCTGGACGGCCTCCCGGTTTC    238

BSNT_02363___    239 CGACAAATGCAACAGTGTGGGCGATTATCGGCAGAAACAACGGGTTTGTC    288
                     ||||.||.||..|.||.|||||..||..|||..|.||..|||||||||||
RBAM_013930__    239 CGACGAACGCCTCCGTATGGGCCGTTGCCGGGCGGAATGACGGGTTTGTC    288

BSNT_02363___    289 TGCGCCCACGGTAAGCAT--TGTATTTATGTATCGGATGATTTTGGTGTC    336
                     ||.||.|||||.|  |||  ||..|.||..||||.||||||||.||.|||
RBAM_013930__    289 TGTGCGCACGGCA--CATACTGCCTCTACTTATCTGATGATTTCGGCGTC    336

BSNT_02363___    337 TCATGGCGCGTAGCCAAACCTTTTGCCGAATTTCATAATCCCCCTGTTAT    386
                     .|.||||..||.||.||.||.|||.|..||||..|..|.||.|||||.||
RBAM_013930__    337 ACTTGGCATGTGGCTAAGCCCTTTTCACAATTAAAGGAGCCGCCTGTCAT    386

BSNT_02363___    387 CCGGTCGCTATGCCTTCACGGGGGCAATC------TTTTTATCGGCACGC    430
                     |||.|||||.||..|.|||||      ||      |||.|||||||||.|
RBAM_013930__    387 CCGTTCGCTTTGTTTACACGG------TCAGACGATTTATATCGGCACCC    430

BSNT_02363___    431 AAAT--ACACGAAT-ATTTTGGCGGCATTTGGGCTTACGACATTAAGCGT    477
                     ..||  |||.|||| |   |||||||||||||||.||.||..|.|  ||.
RBAM_013930__    431 GGATTCACATGAATCA---TGGCGGCATTTGGGCGTATGATCTGA--CGG    475

BSNT_02363___    478 GACACTG--TCCAAGTTGTCAAAAAA-----GAAAAAAACCGGATGACGG    520
                     .|.||.|  |||     |.|..|.||     ||||...|.||.|||||||
RBAM_013930__    476 AAGACCGCATCC-----GGCGTATAAGCCGCGAAAGGCAGCGCATGACGG    520

BSNT_02363___    521 CATCCATGCTCGTGTTCAATGAAAAT---TGGCTGGTGGCGGCGATGGGT    567
                     |.||.|||....|||   ||.|.|||   |||||..|.||.||.|.|||.
RBAM_013930__    521 CTTCAATGAGGATGT---ATCAGAATGACTGGCTCATTGCAGCAAAGGGC    567

BSNT_02363___    568 TCTGTGAAAGGAAAGCACGG--------TGCTGTC---ACCGTACGGAAT    606
                     .|.|..||.||  ||.||||        |||.|||   |.|||.||||..
RBAM_013930__    568 GCGGCAAAGGG--AGAACGGGGGGAGGTTGCCGTCCGAAACGTGCGGACG    615

BSNT_02363___    607 CTTTTGAATGGTGAAGAATTCATCATTCAATCCAGCATGATCAG----AA    652
                     |     ||    ||.||.||...|||    |.||||..||.|.|    |.
RBAM_013930__    616 C-----AA----GAGGAGTTTGCCAT----TACAGCCGGACCCGCCGTAC    652

BSNT_02363___    653 TAGAAGAATCATTTCTTGATCTTTCAGAGGATGATGGCATTATATATGTC    702
                     ..|||.||||||||||.||..||||.||||||.|.||.|||||.||||||
RBAM_013930__    653 GGGAAAAATCATTTCTCGACGTTTCTGAGGATAACGGGATTATTTATGTC    702

BSNT_02363___    703 ACTACAACACAAGATGAAAACGGTTTTTCGAGAATTTACCAGGCTGATCT    752
                     ||..|..||||.||.||||||||.||||||.|.|||||.||.||||||||
RBAM_013930__    703 ACATCGTCACAGGACGAAAACGGATTTTCGCGTATTTATCAAGCTGATCT    752

BSNT_02363___    753 CGAAGCCCGATCGTTAAAATGGTTCGATACCATTAAGGGGCATGGATGGA    802
                     ||..|||.|....|||||.|||||.|||||.||....||.||.||||||.
RBAM_013930__    753 CGCCGCCGGTGAATTAAAGTGGTTTGATACGATCCGCGGTCACGGATGGC    802

BSNT_02363___    803 GAGTGGCCAATCAGAAAGAGAATTTCTTTTGCGCAGGCTTGTATGAATGT    852
                     |.||||||||.|.|.||||.||.||.||||||||.|||.|.||.|||.||
RBAM_013930__    803 GGGTGGCCAACCGGGAAGAAAACTTTTTTTGCGCGGGCCTTTACGAAAGT    852

BSNT_02363___    853 AAATTTGTCCAG-CCGTACGA---AGTT----TCAGCAATGATTCATTAG    894
                     ||.||||| ||| |||||.||   .|||    || |||      ||||||
RBAM_013930__    853 AAGTTTGT-CAGACCGTATGAGGCGGTTCGGCTC-GCA------CATTAG    894


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