Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02358 and RBAM_013880

See Amino acid alignment / Visit BSNT_02358 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:04
# Commandline: needle
#    -asequence dna-align/BSNT_02358___ykuK.1.9828.seq
#    -bsequence dna-align/RBAM_013880___ykuK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02358___ykuK-RBAM_013880___ykuK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02358___ykuK-RBAM_013880___ykuK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02358___ykuK
# 2: RBAM_013880___ykuK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 521
# Identity:     420/521 (80.6%)
# Similarity:   420/521 (80.6%)
# Gaps:           4/521 ( 0.8%)
# Score: 1672.0
# 
#
#=======================================

BSNT_02358___      1 ATGGCTGATTCTTTTCTGTTTTATAATCTTTCAGAAGCACAGATGACCTT     50
                     ||||||||||||||||||||||||||||||||.||.||||||||||||||
RBAM_013880__      1 ATGGCTGATTCTTTTCTGTTTTATAATCTTTCTGAGGCACAGATGACCTT     50

BSNT_02358___     51 TCAAGATGTGATGGAACGGCTTAAAGCCTTTGTTCAA-AAGGACCCCCGT     99
                     ||||||.||||.|||.|||||.|||..||||| |||| ||.|||||||||
RBAM_013880__     51 TCAAGACGTGACGGAGCGGCTGAAACGCTTTG-TCAATAAAGACCCCCGT     99

BSNT_02358___    100 TCTTCTTATGTGTTATCGATCGGAACCGATTCACAGGTTTACCGCGATTA    149
                     ||..|.||.|||.|.||..|.||.||.||||||||.|||||||||||.|.
RBAM_013880__    100 TCAGCATACGTGCTGTCTGTAGGGACTGATTCACAAGTTTACCGCGACTT    149

BSNT_02358___    150 CACAAAGTTTATTACCGCATTGCATTTGCATCGTACAGGCAAGGGAGCTT    199
                     |||||||||||||||.||..|.||.|||||.|||||||||||||||||||
RBAM_013880__    150 CACAAAGTTTATTACGGCTATACACTTGCACCGTACAGGCAAGGGAGCTT    199

BSNT_02358___    200 GGGGCTGCTTGAAAAATCATACAGTCGACAGACCCATACATAGCCTTCGG    249
                     |||||||.||||||||||||....|.|..|||||.||||||||||||||.
RBAM_013880__    200 GGGGCTGTTTGAAAAATCATGATCTTGCAAGACCGATACATAGCCTTCGC    249

BSNT_02358___    250 GAGAAGATTTCGTTAGAAACGGCGTACAGCCAAGAAACGGCCGCTCATAT    299
                     ||.||.||||||.|.|||||.||||.||||||.||.|.|||.||.||.||
RBAM_013880__    250 GAAAAAATTTCGCTGGAAACCGCGTTCAGCCAGGAGATGGCTGCGCACAT    299

BSNT_02358___    300 TCTTGATGGAC-ACTTAATGGATATTACCGATCTGCTCCTGCCCTTTACC    348
                     .||.||.||.| .||| |||||.||.||.|||.|.|||.||||.|||.|.
RBAM_013880__    300 CCTCGACGGCCGTCTT-ATGGAAATGACAGATTTACTCTTGCCTTTTGCG    348

BSNT_02358___    349 GGTGAGGGGGCGGATCTTACCTTTGAAGTTCACTTGGATATTGGGAAAAA    398
                     |.|||.||||||||||||.|.||||||||.||..|||||||.||..||||
RBAM_013880__    349 GATGAAGGGGCGGATCTTTCATTTGAAGTGCATCTGGATATCGGTCAAAA    398

BSNT_02358___    399 AGGGCTTACAAAAGATCTGATCCAGGAAATGACTGGACGTATTACCTCCA    448
                     |||.||.||||||||..||||.||.||||||||.||.||.||||||||.|
RBAM_013880__    399 AGGACTGACAAAAGAATTGATACAAGAAATGACCGGCCGCATTACCTCGA    448

BSNT_02358___    449 TGGGGATTGAGGCCAAAATAAAGCCGGATTCATACACTGCCTTCAGCTAT    498
                     ||||.|||||.||.|||||.|||||.|||||.|.|||.||.|||||.|||
RBAM_013880__    449 TGGGCATTGAAGCGAAAATCAAGCCCGATTCCTGCACAGCATTCAGTTAT    498

BSNT_02358___    499 GCAAATCGTTTCACAAAATAA    519
                     ||.|||||||.||||||||||
RBAM_013880__    499 GCCAATCGTTACACAAAATAA    519


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