Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02350 and RBAM_013820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:04
# Commandline: needle
# -asequence dna-align/BSNT_02350___ykuC.1.9828.seq
# -bsequence dna-align/RBAM_013820___ykuC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02350___ykuC-RBAM_013820___ykuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02350___ykuC-RBAM_013820___ykuC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02350___ykuC
# 2: RBAM_013820___ykuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1311
# Identity: 1003/1311 (76.5%)
# Similarity: 1003/1311 (76.5%)
# Gaps: 36/1311 ( 2.7%)
# Score: 3785.5
#
#
#=======================================
BSNT_02350___ 1 ATGGATATATTTAAAAATCGTAATTTTGTTCGTCTATTTTTCGCAGCACT 50
||||||||||||||||||||.||||||||.|||||.||||||||||||||
RBAM_013820__ 1 ATGGATATATTTAAAAATCGCAATTTTGTCCGTCTCTTTTTCGCAGCACT 50
BSNT_02350___ 51 CGCTTCTCAAATGGGCACGACAGTAGGCAACATGGCCTTTGCTTTTTTTT 100
|||||||||||||||.|||||.|||||.||.|||||.||.|||||||..|
RBAM_013820__ 51 CGCTTCTCAAATGGGAACGACTGTAGGTAATATGGCTTTCGCTTTTTACT 100
BSNT_02350___ 101 TGCTGGACCGA---TTCAGCAGCCAGCCTTCATATACGACCTTGGCGGAG 147
||||||||| | |||| |.||||||..||||.|||||..||||.|||
RBAM_013820__ 101 TGCTGGACC-ATTTTTCA--AACCAGCCGGCATACACGACTCTGGCTGAG 147
BSNT_02350___ 148 CTGATGTATTCTCTTCCGACCATATTTGTATTTCTGATCGTGGGAGTCGT 197
|||||||||||.||.|||||..|.||.|||||||||||.||.||.||||.
RBAM_013820__ 148 CTGATGTATTCACTGCCGACAGTTTTCGTATTTCTGATTGTCGGTGTCGC 197
BSNT_02350___ 198 CGCGGACCGGTTTGACAGAAAAAAGGTGGCAGAAAATTGTGATTGGATCA 247
.||.||||||.|||||||.||||||||.|||||.||||||||.|||||||
RBAM_013820__ 198 AGCTGACCGGCTTGACAGGAAAAAGGTCGCAGAGAATTGTGACTGGATCA 247
BSNT_02350___ 248 GAGCAGGCCTGACTGTCGTGCTTTTTTTCACTTTATTTACCGGCAATATT 297
||||.||.|||||..||||..|.|||..|.|.||||..|||||.|..||.
RBAM_013820__ 248 GAGCCGGACTGACGATCGTATTGTTTGCCGCATTATACACCGGGAGCATC 297
BSNT_02350___ 298 CCTCTTGTTTTTTGTATCTTATTTATCAGAAGCGCTGTAACAAAGTTTTT 347
|||||.||.||.|||||.||.||.|||||||||||.||.||.|||||.||
RBAM_013820__ 298 CCTCTCGTGTTCTGTATTTTGTTCATCAGAAGCGCCGTGACCAAGTTCTT 347
BSNT_02350___ 348 CTTTCCGGCAGAAAACAGTTTGGTACAAGCCATTCTGCCGAAGGAGCATT 397
.||.|||||.|||..|||..|.||||||||.||||||||.||||||||||
RBAM_013820__ 348 TTTCCCGGCGGAAGCCAGCCTTGTACAAGCTATTCTGCCTAAGGAGCATT 397
BSNT_02350___ 398 ATGCGAAAGCGGCAGGGCTTAATCAGATGCTTTTTAGCATTTTTATGGTG 447
|.|||||||||||.||.|||||.|||||.||.||.|||||.||.|||||.
RBAM_013820__ 398 ACGCGAAAGCGGCGGGACTTAACCAGATTCTGTTCAGCATCTTCATGGTA 447
BSNT_02350___ 448 TTTGGAGTCGGTATAGGCGCATTTATGTACAACACCATCGGTATTGAAGG 497
||.||.||||||||||||||.||||||||.||.||.|||||||||.|.||
RBAM_013820__ 448 TTCGGCGTCGGTATAGGCGCGTTTATGTATAAAACGATCGGTATTCACGG 497
BSNT_02350___ 498 CGCCATTATTCTTGATTTTGTCAGCTTTATCATTTCCGGGCTGCTCATCC 547
.|||||.||.||||||||||||||||||||..|.||.||..|.||.||||
RBAM_013820__ 498 AGCCATCATCCTTGATTTTGTCAGCTTTATTGTATCAGGCTTTCTGATCC 547
BSNT_02350___ 548 GCAGC-TGCCGGATTCCAAAAGAAGCCCGACAGCCAAACGGTGCATTCAG 596
|| || |||||.|||||.|||||||||||.|||||.|||||..|.||.|.
RBAM_013820__ 548 GC-GCGTGCCGCATTCCGAAAGAAGCCCGTCAGCCGAACGGCCCTTTTAA 596
BSNT_02350___ 597 CTGGAGAAAGAC--TTCTGTTAAGGATTCAATAAATGACTTTAGAGAAGG 644
.|||.||.|..| ||||| ||.||.||..|...|||.||||..|||||
RBAM_013820__ 597 ATGGGGAGATTCGTTTCTG--AAAGACTCGGTCGCTGATTTTAAGGAAGG 644
BSNT_02350___ 645 CATCCTCTATATTTTAAAAAACAAATTGCTGGCATCTCTTATTTTTGGCT 694
.|||.|.||||||.|.||||||||||||||.||.||.||||||||.||||
RBAM_013820__ 645 GATCGTATATATTGTTAAAAACAAATTGCTTGCTTCCCTTATTTTCGGCT 694
BSNT_02350___ 695 TCTTTATTTTTGGATTTGTCAATGGAGGATTCGCCGTATTGCCGATGTTT 744
|.|||||.|||||.||||||||.||.||.||.||||||.|||||||||||
RBAM_013820__ 695 TTTTTATCTTTGGTTTTGTCAACGGCGGCTTTGCCGTACTGCCGATGTTT 744
BSNT_02350___ 745 ACAATGAAATATGGATTGGCGCCTGACCGTTATGAGTGGCATACGTCTGT 794
||.||||||||.|||.|.||||||||.|.|||.||.|..|||||.||..|
RBAM_013820__ 745 ACGATGAAATACGGACTTGCGCCTGATCATTACGAATCACATACTTCCAT 794
BSNT_02350___ 795 ATTTACGATCGCACTCGGGTTTGGGCTGCTGGCAGGCAGCGTAATCGGCA 844
.||.||..||||||||||.||.||.|||||.|||||.||.||.|||||.|
RBAM_013820__ 795 CTTCACCGTCGCACTCGGCTTCGGCCTGCTTGCAGGAAGTGTGATCGGAA 844
BSNT_02350___ 845 CGATCATCTCTAAAAAAGTGAAGCCGCACTTTTTAATGTCGATACCGATT 894
||||.|||.|.||||||||.||.|||||...|||.||||||||.||.|||
RBAM_013820__ 845 CGATGATCGCAAAAAAAGTCAAACCGCATCATTTGATGTCGATTCCTATT 894
BSNT_02350___ 895 TT--CATTGCAGGTTTGCTGATCTTCGTCCTCGGCTACACCAATATTTTA 942
|| || ||.||..||||.||.||.|||||||||||.||..|||...|.
RBAM_013820__ 895 TTGGCA--GCCGGACTGCTCATTTTTGTCCTCGGCTATACGGATAAGCTG 942
BSNT_02350___ 943 TGGGTGTATTACGCGGCAGCTTTTGCACTGGGAATGTGCATCGGACCGAT 992
|||.|.|||||.|||||.|||||.|..||.||.|||||||||||.||..|
RBAM_013820__ 943 TGGATTTATTATGCGGCGGCTTTCGTCCTCGGCATGTGCATCGGCCCTGT 992
BSNT_02350___ 993 CAACATTGCAATCGGAGGCTGGATGCCCAAAATTGTTCATCCAAAACTGA 1042
|||.||.||.|||||.|||||||||||.|||||.||||||||.|||.|.|
RBAM_013820__ 993 CAATATCGCCATCGGCGGCTGGATGCCGAAAATCGTTCATCCGAAAATAA 1042
BSNT_02350___ 1043 TGGGACGTGTAAGCGGCATGCAGGACCCTTTTATGATGTTTGCACAGTCT 1092
||||.||.||.||||||..||||||.|||||||||||||||||.||.||.
RBAM_013820__ 1043 TGGGCCGGGTCAGCGGCTGGCAGGATCCTTTTATGATGTTTGCCCAATCG 1092
BSNT_02350___ 1093 TTGACACTTGGCTTAGTCGCGCTGTTATTCCCTAAGTTTGTTTCAAACAT 1142
.|.|||||.||..|.|||||.||||||||.||.||.||.|||.|.||.||
RBAM_013820__ 1093 ATTACACTCGGACTGGTCGCCCTGTTATTTCCGAAATTCGTTACCAATAT 1142
BSNT_02350___ 1143 TGATTATCTTTATTACGGCATGG-----GTGTTATTATCCTGCTCGTTTT 1187
||||||.|||||||||||||||| |||.|.|||.| .||.||
RBAM_013820__ 1143 TGATTACCTTTATTACGGCATGGGAATCGTGATTTTAGC-----GGTATT 1187
BSNT_02350___ 1188 TATTTTTTATTTTATTGCACTGCCAAAATACAGTGCTCAGGCTGTGGAAG 1237
|.|.||.||||||||.||.||.||.||||||||.||..||.|.|..||..
RBAM_013820__ 1188 TGTGTTCTATTTTATCGCTCTTCCGAAATACAGCGCCGAGACAGCAGAGA 1237
BSNT_02350___ 1238 TGAATGTTCAGGAAGCATTTCAAGAACAGCCGA-----AAAAGAAGGCAA 1282
|..||||.|||.||.|||| ||..||.|| ||||..|.||.|
RBAM_013820__ 1238 TCGATGTGCAGCAATCATT-----AAAGGCTGATTCTGAAAAACATGCGA 1282
BSNT_02350___ 1283 GATCTGTATAA 1293
.|.||||.|||
RBAM_013820__ 1283 AACCTGTCTAA 1293
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