Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02350 and RBAM_013820

See Amino acid alignment / Visit BSNT_02350 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:04
# Commandline: needle
#    -asequence dna-align/BSNT_02350___ykuC.1.9828.seq
#    -bsequence dna-align/RBAM_013820___ykuC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02350___ykuC-RBAM_013820___ykuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02350___ykuC-RBAM_013820___ykuC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02350___ykuC
# 2: RBAM_013820___ykuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1311
# Identity:    1003/1311 (76.5%)
# Similarity:  1003/1311 (76.5%)
# Gaps:          36/1311 ( 2.7%)
# Score: 3785.5
# 
#
#=======================================

BSNT_02350___      1 ATGGATATATTTAAAAATCGTAATTTTGTTCGTCTATTTTTCGCAGCACT     50
                     ||||||||||||||||||||.||||||||.|||||.||||||||||||||
RBAM_013820__      1 ATGGATATATTTAAAAATCGCAATTTTGTCCGTCTCTTTTTCGCAGCACT     50

BSNT_02350___     51 CGCTTCTCAAATGGGCACGACAGTAGGCAACATGGCCTTTGCTTTTTTTT    100
                     |||||||||||||||.|||||.|||||.||.|||||.||.|||||||..|
RBAM_013820__     51 CGCTTCTCAAATGGGAACGACTGTAGGTAATATGGCTTTCGCTTTTTACT    100

BSNT_02350___    101 TGCTGGACCGA---TTCAGCAGCCAGCCTTCATATACGACCTTGGCGGAG    147
                     ||||||||| |   ||||  |.||||||..||||.|||||..||||.|||
RBAM_013820__    101 TGCTGGACC-ATTTTTCA--AACCAGCCGGCATACACGACTCTGGCTGAG    147

BSNT_02350___    148 CTGATGTATTCTCTTCCGACCATATTTGTATTTCTGATCGTGGGAGTCGT    197
                     |||||||||||.||.|||||..|.||.|||||||||||.||.||.||||.
RBAM_013820__    148 CTGATGTATTCACTGCCGACAGTTTTCGTATTTCTGATTGTCGGTGTCGC    197

BSNT_02350___    198 CGCGGACCGGTTTGACAGAAAAAAGGTGGCAGAAAATTGTGATTGGATCA    247
                     .||.||||||.|||||||.||||||||.|||||.||||||||.|||||||
RBAM_013820__    198 AGCTGACCGGCTTGACAGGAAAAAGGTCGCAGAGAATTGTGACTGGATCA    247

BSNT_02350___    248 GAGCAGGCCTGACTGTCGTGCTTTTTTTCACTTTATTTACCGGCAATATT    297
                     ||||.||.|||||..||||..|.|||..|.|.||||..|||||.|..||.
RBAM_013820__    248 GAGCCGGACTGACGATCGTATTGTTTGCCGCATTATACACCGGGAGCATC    297

BSNT_02350___    298 CCTCTTGTTTTTTGTATCTTATTTATCAGAAGCGCTGTAACAAAGTTTTT    347
                     |||||.||.||.|||||.||.||.|||||||||||.||.||.|||||.||
RBAM_013820__    298 CCTCTCGTGTTCTGTATTTTGTTCATCAGAAGCGCCGTGACCAAGTTCTT    347

BSNT_02350___    348 CTTTCCGGCAGAAAACAGTTTGGTACAAGCCATTCTGCCGAAGGAGCATT    397
                     .||.|||||.|||..|||..|.||||||||.||||||||.||||||||||
RBAM_013820__    348 TTTCCCGGCGGAAGCCAGCCTTGTACAAGCTATTCTGCCTAAGGAGCATT    397

BSNT_02350___    398 ATGCGAAAGCGGCAGGGCTTAATCAGATGCTTTTTAGCATTTTTATGGTG    447
                     |.|||||||||||.||.|||||.|||||.||.||.|||||.||.|||||.
RBAM_013820__    398 ACGCGAAAGCGGCGGGACTTAACCAGATTCTGTTCAGCATCTTCATGGTA    447

BSNT_02350___    448 TTTGGAGTCGGTATAGGCGCATTTATGTACAACACCATCGGTATTGAAGG    497
                     ||.||.||||||||||||||.||||||||.||.||.|||||||||.|.||
RBAM_013820__    448 TTCGGCGTCGGTATAGGCGCGTTTATGTATAAAACGATCGGTATTCACGG    497

BSNT_02350___    498 CGCCATTATTCTTGATTTTGTCAGCTTTATCATTTCCGGGCTGCTCATCC    547
                     .|||||.||.||||||||||||||||||||..|.||.||..|.||.||||
RBAM_013820__    498 AGCCATCATCCTTGATTTTGTCAGCTTTATTGTATCAGGCTTTCTGATCC    547

BSNT_02350___    548 GCAGC-TGCCGGATTCCAAAAGAAGCCCGACAGCCAAACGGTGCATTCAG    596
                     || || |||||.|||||.|||||||||||.|||||.|||||..|.||.|.
RBAM_013820__    548 GC-GCGTGCCGCATTCCGAAAGAAGCCCGTCAGCCGAACGGCCCTTTTAA    596

BSNT_02350___    597 CTGGAGAAAGAC--TTCTGTTAAGGATTCAATAAATGACTTTAGAGAAGG    644
                     .|||.||.|..|  |||||  ||.||.||..|...|||.||||..|||||
RBAM_013820__    597 ATGGGGAGATTCGTTTCTG--AAAGACTCGGTCGCTGATTTTAAGGAAGG    644

BSNT_02350___    645 CATCCTCTATATTTTAAAAAACAAATTGCTGGCATCTCTTATTTTTGGCT    694
                     .|||.|.||||||.|.||||||||||||||.||.||.||||||||.||||
RBAM_013820__    645 GATCGTATATATTGTTAAAAACAAATTGCTTGCTTCCCTTATTTTCGGCT    694

BSNT_02350___    695 TCTTTATTTTTGGATTTGTCAATGGAGGATTCGCCGTATTGCCGATGTTT    744
                     |.|||||.|||||.||||||||.||.||.||.||||||.|||||||||||
RBAM_013820__    695 TTTTTATCTTTGGTTTTGTCAACGGCGGCTTTGCCGTACTGCCGATGTTT    744

BSNT_02350___    745 ACAATGAAATATGGATTGGCGCCTGACCGTTATGAGTGGCATACGTCTGT    794
                     ||.||||||||.|||.|.||||||||.|.|||.||.|..|||||.||..|
RBAM_013820__    745 ACGATGAAATACGGACTTGCGCCTGATCATTACGAATCACATACTTCCAT    794

BSNT_02350___    795 ATTTACGATCGCACTCGGGTTTGGGCTGCTGGCAGGCAGCGTAATCGGCA    844
                     .||.||..||||||||||.||.||.|||||.|||||.||.||.|||||.|
RBAM_013820__    795 CTTCACCGTCGCACTCGGCTTCGGCCTGCTTGCAGGAAGTGTGATCGGAA    844

BSNT_02350___    845 CGATCATCTCTAAAAAAGTGAAGCCGCACTTTTTAATGTCGATACCGATT    894
                     ||||.|||.|.||||||||.||.|||||...|||.||||||||.||.|||
RBAM_013820__    845 CGATGATCGCAAAAAAAGTCAAACCGCATCATTTGATGTCGATTCCTATT    894

BSNT_02350___    895 TT--CATTGCAGGTTTGCTGATCTTCGTCCTCGGCTACACCAATATTTTA    942
                     ||  ||  ||.||..||||.||.||.|||||||||||.||..|||...|.
RBAM_013820__    895 TTGGCA--GCCGGACTGCTCATTTTTGTCCTCGGCTATACGGATAAGCTG    942

BSNT_02350___    943 TGGGTGTATTACGCGGCAGCTTTTGCACTGGGAATGTGCATCGGACCGAT    992
                     |||.|.|||||.|||||.|||||.|..||.||.|||||||||||.||..|
RBAM_013820__    943 TGGATTTATTATGCGGCGGCTTTCGTCCTCGGCATGTGCATCGGCCCTGT    992

BSNT_02350___    993 CAACATTGCAATCGGAGGCTGGATGCCCAAAATTGTTCATCCAAAACTGA   1042
                     |||.||.||.|||||.|||||||||||.|||||.||||||||.|||.|.|
RBAM_013820__    993 CAATATCGCCATCGGCGGCTGGATGCCGAAAATCGTTCATCCGAAAATAA   1042

BSNT_02350___   1043 TGGGACGTGTAAGCGGCATGCAGGACCCTTTTATGATGTTTGCACAGTCT   1092
                     ||||.||.||.||||||..||||||.|||||||||||||||||.||.||.
RBAM_013820__   1043 TGGGCCGGGTCAGCGGCTGGCAGGATCCTTTTATGATGTTTGCCCAATCG   1092

BSNT_02350___   1093 TTGACACTTGGCTTAGTCGCGCTGTTATTCCCTAAGTTTGTTTCAAACAT   1142
                     .|.|||||.||..|.|||||.||||||||.||.||.||.|||.|.||.||
RBAM_013820__   1093 ATTACACTCGGACTGGTCGCCCTGTTATTTCCGAAATTCGTTACCAATAT   1142

BSNT_02350___   1143 TGATTATCTTTATTACGGCATGG-----GTGTTATTATCCTGCTCGTTTT   1187
                     ||||||.||||||||||||||||     |||.|.|||.|     .||.||
RBAM_013820__   1143 TGATTACCTTTATTACGGCATGGGAATCGTGATTTTAGC-----GGTATT   1187

BSNT_02350___   1188 TATTTTTTATTTTATTGCACTGCCAAAATACAGTGCTCAGGCTGTGGAAG   1237
                     |.|.||.||||||||.||.||.||.||||||||.||..||.|.|..||..
RBAM_013820__   1188 TGTGTTCTATTTTATCGCTCTTCCGAAATACAGCGCCGAGACAGCAGAGA   1237

BSNT_02350___   1238 TGAATGTTCAGGAAGCATTTCAAGAACAGCCGA-----AAAAGAAGGCAA   1282
                     |..||||.|||.||.||||     ||..||.||     ||||..|.||.|
RBAM_013820__   1238 TCGATGTGCAGCAATCATT-----AAAGGCTGATTCTGAAAAACATGCGA   1282

BSNT_02350___   1283 GATCTGTATAA   1293
                     .|.||||.|||
RBAM_013820__   1283 AACCTGTCTAA   1293


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