Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02342 and RBAM_013770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:03
# Commandline: needle
# -asequence dna-align/BSNT_02342___kinA.1.9828.seq
# -bsequence dna-align/RBAM_013770___kinA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02342___kinA-RBAM_013770___kinA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02342___kinA-RBAM_013770___kinA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02342___kinA
# 2: RBAM_013770___kinA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1861
# Identity: 1103/1861 (59.3%)
# Similarity: 1103/1861 (59.3%)
# Gaps: 479/1861 (25.7%)
# Score: 4178.5
#
#
#=======================================
BSNT_02342___ 1 GTGGAACAGGATACGCAGCATGTTAAACCACTTCAAACAAAAACCGATAT 50
||||||||||||||.||||||||.||||...|||||.|.|||||||||.|
RBAM_013770__ 1 GTGGAACAGGATACTCAGCATGTCAAACAGTTTCAATCGAAAACCGATCT 50
BSNT_02342___ 51 TCATGCAGTCTTGGCCTCTAATGGACGCATCATTTATATATCTGCCAACT 100
||||||.||.|||.|.|||||.||.||.||.||.|||||.|||||.||||
RBAM_013770__ 51 TCATGCCGTTTTGACGTCTAACGGGCGTATTATGTATATTTCTGCAAACT 100
BSNT_02342___ 101 CCAAACTGCATTTGGGCTA-TCTCCAAGG-AGAGATGATCGGATCATTCC 148
.||||..|.|.||..|.|| |||| ||| ||||||||||||.|||||.|
RBAM_013770__ 101 GCAAATCGTACTTCAGTTATTCTC--AGGAAGAGATGATCGGGTCATTTC 148
BSNT_02342___ 149 TCAAAACGTTTCTGCATGAGGAAGACCAATTTTTGGTTGAAAGCTATTTT 198
||||||||||.||||||||.|||||.|||||||||||||||||.||.||.
RBAM_013770__ 149 TCAAAACGTTCCTGCATGAAGAAGATCAATTTTTGGTTGAAAGTTACTTC 198
BSNT_02342___ 199 TATAATGAACATCATCTGATGCCGTGCACCTTTCGTTTTATTAAAAAAGA 248
||||||||.||||||.|||||||.||||||||||||.|||||||||||||
RBAM_013770__ 199 TATAATGAGCATCATTTGATGCCTTGCACCTTTCGTCTTATTAAAAAAGA 248
BSNT_02342___ 249 TCATACGATTGTGTGGGTGGAGGCTGCGGTAGAAATTGTTACGA---CAA 295
||||||.||.||.|||.|.||.||.|..||.||||||||.|| | |||
RBAM_013770__ 249 TCATACCATCGTATGGCTTGAAGCGGGTGTGGAAATTGTCAC-ACCGCAA 297
BSNT_02342___ 296 GAGCTGAGCGGACAGAACGGGAAATCATTTTGAAAATGAAGGTTCTTGA- 344
..| |||.||||.||.|||||||||||..|.|||||.|||||.|||||
RBAM_013770__ 298 ATG--GAGGGGACGGATCGGGAAATCATCCTCAAAATCAAGGTGCTTGAG 345
BSNT_02342___ 345 -AGAAGA-----AACAGGCCATCAATCCCTAAACTGCGAAAAACATGAAA 388
|||||| ..|.||||.|..||...|.||| ||||.|.|.||
RBAM_013770__ 346 GAGAAGACGCCCCGCCGGCCTTATATGTATGAAC-----AAAAGAAGCAA 390
BSNT_02342___ 389 TCGAACCTGCAAGCC-----------CGGAA---TCGACTACATATATAA 424
|||.| ||||| .||.||..| ||
RBAM_013770__ 391 ----------AAGGCAGAACAACAGTCGGAAGATGCGGCTGGA-----AA 425
BSNT_02342___ 425 CGGATGATTATGAACGGTTGGTTGAAAATCTCCCGAGTCCGCTATGCATC 474
||| .||.|..||.||..|.||.||||..||.||||.|||..|||...||
RBAM_013770__ 426 CGG-CGAATTCGAGCGTCTTGTCGAAATGCTGCCGAATCCTTTATATGTC 474
BSNT_02342___ 475 AGTGTCAAAGGCAAGATCGTCTATGTAAACAGCGCGATGCTCTCAATGCT 524
||..||||.||||..||||.|||.|..||||.|||||||||..|.|||||
RBAM_013770__ 475 AGCATCAACGGCACAATCGCCTACGCCAACAACGCGATGCTTGCCATGCT 524
BSNT_02342___ 525 GGGAGCAAAAAGCAAGGATGCTATTATTGGAAAATGGTCCTATGAATTTA 574
||||||..|.|||||.||.|...|.||.||.|...|.||.|||||.||||
RBAM_013770__ 525 GGGAGCCGACAGCAAAGACGAGGTAATCGGCAGGCGCTCTTATGAGTTTA 574
BSNT_02342___ 575 TTGAAGAAGAATATCATGATATCGTGAAAAACAGGATTATACGAATGCAA 624
||||||||||.|||||.||.||.|||||||||.|.|||.|.||.||||||
RBAM_013770__ 575 TTGAAGAAGAGTATCACGACATTGTGAAAAACCGAATTGTGCGGATGCAA 624
BSNT_02342___ 625 AAAGGAATGGAAGTCGGAATGATTGAACAGACGTGGAAAAGGCTTGATGG 674
|||||||||||||||||||||||.|||||||||||||.||||||.||.||
RBAM_013770__ 625 AAAGGAATGGAAGTCGGAATGATCGAACAGACGTGGAGAAGGCTCGACGG 674
BSNT_02342___ 675 CACACCTGTTCATTTAGAAGTGAAAGCATCCCCGACCGTC-TACAAAAAC 723
|||.||.||||||||||||||.||.||..|.|||| ||.| ||.|||||.
RBAM_013770__ 675 CACGCCCGTTCATTTAGAAGTAAAGGCGGCACCGA-CGACATATAAAAAT 723
BSNT_02342___ 724 CAGCAGGCTGA---GCTGCTGCTGATCGATATCTCTTCAAGGAAAAAATT 770
||||.|||.|| ||||||.|||||.|||||.||||||.||||||||||
RBAM_013770__ 724 CAGCGGGCGGAATTGCTGCTTCTGATTGATATTTCTTCACGGAAAAAATT 773
BSNT_02342___ 771 CCAAACCATCCTGCAAAAAAGCCGTGAACGATATCAGCTGCTGATTCAAA 820
||||||.||.||||||||||||.|.||.||.||||||||.||.|||||.|
RBAM_013770__ 774 CCAAACGATTCTGCAAAAAAGCAGAGAGCGTTATCAGCTCCTCATTCAGA 823
BSNT_02342___ 821 ATTCCATTGATACCATTGCGGTGATTCACAATGGAAAATGGGTGTTTATG 870
||||.|||||.||.||.||.|||||||||||||..||||||||.||.|||
RBAM_013770__ 824 ATTCAATTGACACGATCGCCGTGATTCACAATGATAAATGGGTATTCATG 873
BSNT_02342___ 871 AATGAATCGGGAATTTCCCTGTTTGAAGCGGCTACATATGAGGATTTAAT 920
|||||.|||||.|||||.||||||||.||.|..||||||||.||||||||
RBAM_013770__ 874 AATGAGTCGGGTATTTCGCTGTTTGAGGCTGAAACATATGAAGATTTAAT 923
BSNT_02342___ 921 TGGCAAAAACATATACGATCAGCTGCATCCTTGCGATCACGAGGATGTAA 970
.||.||||||.|.||.||||||||.|||||.||.|||||.||.|..||.|
RBAM_013770__ 924 CGGGAAAAACGTCTATGATCAGCTTCATCCCTGTGATCATGACGGCGTGA 973
BSNT_02342___ 971 AAGAGAGAATCCAAAACATCGCCGAGCAAAAAACAGAATCTGAAATTGTC 1020
||.||.|.||||||||.||...|.|.|.|||.||.||.||.||||||.|.
RBAM_013770__ 974 AACAGCGGATCCAAAATATTATCAACCGAAAGACCGAGTCAGAAATTATT 1023
BSNT_02342___ 1021 AAGCAATCCTGGTTCACCTTTCAGAACAGGGTCATCTATACGGAGATGGT 1070
||||||||.|||||.||||||.|.|||.||.|.|||||.|||||.|||||
RBAM_013770__ 1024 AAGCAATCGTGGTTTACCTTTAAAAACCGGCTGATCTACACGGAAATGGT 1073
BSNT_02342___ 1071 CTGCATTCCGACGACCTTTTTTGGTGAAGCGGCCGTCCAGGTCATTCTTC 1120
|||||||||||||||.|||||.||.|||.|||||||.|||||||||||.|
RBAM_013770__ 1074 CTGCATTCCGACGACGTTTTTCGGAGAAACGGCCGTGCAGGTCATTCTGC 1123
BSNT_02342___ 1121 GGGATATCTCAGAGAGAAAACAAACAGAAGAATTGATGCTGAAATCGGAA 1170
|.|||||.||.|||.|.||.||.||.||.|||||.||||||||.||||||
RBAM_013770__ 1124 GTGATATTTCTGAGCGGAAGCAGACGGAGGAATTAATGCTGAAGTCGGAA 1173
BSNT_02342___ 1171 AAATTATCAATCGCAGGGCAGCTCGCGGCGGGAATCGCCCATGAGATCCG 1220
||..|.||.||||||||||||||.||||||||||||||.||.||.|||||
RBAM_013770__ 1174 AAGCTGTCTATCGCAGGGCAGCTGGCGGCGGGAATCGCTCACGAAATCCG 1223
BSNT_02342___ 1221 CAACCCTCTTACAGCGATCAAAGGATTTTTACAGCTGATGAAACCGACAA 1270
|||.||.||.||.|||||||||||||||||||||||.|||||.|||||.|
RBAM_013770__ 1224 CAATCCGCTGACGGCGATCAAAGGATTTTTACAGCTCATGAAGCCGACGA 1273
BSNT_02342___ 1271 TGGAAGGCAACGAACATTACTTTGATATTGTGTTTTCTGAACTCAGCCGT 1320
||||.|..|||||||||||||||||.|||||||||||||||||.|||.|.
RBAM_013770__ 1274 TGGAGGAAAACGAACATTACTTTGAAATTGTGTTTTCTGAACTGAGCAGA 1323
BSNT_02342___ 1321 ATCGAATTAATACTCAGTGAATTGCTCATGCTGGCGAAACCTCAGCAAAA 1370
||||||||.||..|.|||||..|..|.|||||.|| |||||||||||||
RBAM_013770__ 1324 ATCGAATTGATTTTAAGTGAGCTTTTAATGCTTGC--AACCTCAGCAAAA 1371
BSNT_02342___ 1371 TGCTGTCAAAGAATATTTGAACTTGAA-AAAATTAATTGGTGAGGTTTCA 1419
.||.||.|||||...|.|.|||||.|| |||||| ||..||||
RBAM_013770__ 1372 CGCCGTGAAAGAGCGTGTAAACTTAAAGAAAATT-ATAAGTGA------- 1413
BSNT_02342___ 1420 GCCCTGTTAGAAACGCAGGCGAATTTAAATGGCATTTTTATCAGAACAAG 1469
RBAM_013770__ 1413 -------------------------------------------------- 1413
BSNT_02342___ 1470 TTATGAAAAAGACAGCATTTATATAAACGGGGATCAAAACCAATTAAAGC 1519
RBAM_013770__ 1413 -------------------------------------------------- 1413
BSNT_02342___ 1520 AGGTATTCATTAATTTAATCAAAAATGCAGTTGAATCAATGCCTGATGGG 1569
RBAM_013770__ 1413 -------------------------------------------------- 1413
BSNT_02342___ 1570 GGAACAGTAGACATTATCATAACCGAAGATGAGCATTCTGTTCATGTTAC 1619
RBAM_013770__ 1413 -------------------------------------------------- 1413
BSNT_02342___ 1620 TGTCAAAGACGAAGGGGAAGGTATACCTGAAAAGGTACTAAACCGGATTG 1669
RBAM_013770__ 1413 -------------------------------------------------- 1413
BSNT_02342___ 1670 GAGAGCCATTTTTAACAACAAAAGAAAAAGGTACGGGGCTTGGATTAATG 1719
RBAM_013770__ 1413 -------------------------------------------------- 1413
BSNT_02342___ 1720 GTGACATTTAATATCATTGAAAACCATCAGGGAGTTATACATGTGGACAG 1769
RBAM_013770__ 1413 -------------------------------------------------- 1413
BSNT_02342___ 1770 CCATCCTGAAAAAGGCACAGCGTTTAAAATTTCATTTCCAAAAAATAAAA 1819
RBAM_013770__ 1413 -------------------------------------------------- 1413
BSNT_02342___ 1820 CAACGGCTTAA 1830
RBAM_013770__ 1413 ----------- 1413
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