Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02340 and RBAM_013760
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:03
# Commandline: needle
# -asequence dna-align/BSNT_02340___ykuA.1.9828.seq
# -bsequence dna-align/RBAM_013760___ykuA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02340___ykuA-RBAM_013760___ykuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02340___ykuA-RBAM_013760___ykuA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02340___ykuA
# 2: RBAM_013760___ykuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2197
# Identity: 1535/2197 (69.9%)
# Similarity: 1535/2197 (69.9%)
# Gaps: 140/2197 ( 6.4%)
# Score: 5118.0
#
#
#=======================================
BSNT_02340___ 1 GTGACTGAAATAGGACGTGAACCAAAGAAAAAGAGCAAAGGAAACAGAGC 50
|||.|||||.|.|..||.||||||||||||||.|..|||.|..|||||||
RBAM_013760__ 1 GTGGCTGAAGTCGCGCGCGAACCAAAGAAAAAAACGAAACGTTACAGAGC 50
BSNT_02340___ 51 AATCAGAATGAACCTTTTTTTCCTAGCTGTCTTTGTTCTATTCACTGCAT 100
..|.||||||||.||.|.|||..|||.|||.||..||||.||.||.|||.
RBAM_013760__ 51 GCTGAGAATGAATCTCTATTTTTTAGTTGTTTTCCTTCTCTTTACGGCAC 100
BSNT_02340___ 101 TAATTTTTAAGCTCGGGGTTGTTCAAATTGTTGAAGGCGA-----ACAGC 145
|.||||||||.|||||..|.||.||.|||||.|||||.|| ||.||
RBAM_013760__ 101 TGATTTTTAAACTCGGCATCGTCCAGATTGTCGAAGGGGATAAACACCGC 150
BSNT_02340___ 146 ATGAAGAAGACGCTGAGAAATCAAATGCAAAAACAGCTTACTATCCTGCG 195
.|.||.||.|||||..|||||||||||||.||.||.|||||..|.
RBAM_013760__ 151 -----CAGGATGCGGAGAAGGCAAATGCAAAAACCGCCTATTATCCGACA 195
BSNT_02340___ 196 CCTCGCGGGAAGATGTACGACA----GAAATCAGAAAGTTGCTGTCGACA 241
||.||.||.||.|||||.|||| ||| ||| |||.||.||.||.|
RBAM_013760__ 196 CCGCGGGGAAAAATGTATGACAAGCGGAA--CAG--AGTGGCGGTTGATA 241
BSNT_02340___ 242 ACCAGAGCGTTCCAGAAATTGTGTATGTATCAACATCTAGCACAAAAA-- 289
|||||..|||.||.||||||||.||.|| .||||.|.||||||
RBAM_013760__ 242 ACCAGGCCGTGCCTGAAATTGTATACGT------TTCTACCTCAAAAACC 285
BSNT_02340___ 290 ----CAGAAGATAAAATCAAAACAGCGAAGCGGCTTGCTTCTTTCATTCA 335
||.|.||.|||.|.|||||.||.||....|||||..|..|.|||||
RBAM_013760__ 286 TCGGCAAAGGACAAATTGAAAACGGCAAAAAATCTTGCCGCACTGATTCA 335
BSNT_02340___ 336 TATTGATACCGAATTTTTGAAG----GAAAGGGATCTTCGTGATTACTGG 381
|||||||||.||||||.||||| |||| .|||.| ||||||||||
RBAM_013760__ 336 TATTGATACTGAATTTATGAAGGATCGAAA--TATCAT--TGATTACTGG 381
BSNT_02340___ 382 ATCGCAGCTCATCCGAA--------AAAAGCCGCCGCTCTGCTTAAGGAA 423
.|.||.||.|||||||| ||||| ||..|.|||||.
RBAM_013760__ 382 CTTGCCGCACATCCGAAGAAGGCGGAAAAG--------CTTATGAAGGAT 423
BSNT_02340___ 424 TCAGAAAGCAATCTGAAAGGAGACC----AGGCTTACAAGCTTCAAATAG 469
|||||||.||..|||||| .|| |.|..|||||.|..||.||.|
RBAM_013760__ 424 TCAGAAAACAGCCTGAAA----TCCCAAGAAGTATACAAACGCCAGATTG 469
BSNT_02340___ 470 AGCGTGTTCCGGATCAAGA-ATTAAAGGCTATTCAGCAAGATGACGAAGA 518
|.||.||||||.|.||.|| ||| .|.||.||..|..||.||.|..||||
RBAM_013760__ 470 AACGCGTTCCGAAGCAGGAGATT-GACGCGATCAAAAAAAATAAAAAAGA 518
BSNT_02340___ 519 AATGGAAACTGCTGCGATATATACAAGGTTTTCAAGCGGAAATGCTTACG 568
..||||||..||.|||||.|||||..|.|||||||||||.||.||.||..
RBAM_013760__ 519 GCTGGAAATCGCGGCGATTTATACGCGTTTTTCAAGCGGCAACGCCTATC 568
BSNT_02340___ 569 AACCTCAAATCGTAAAGGCAATGAATCCAAATAAGAGCAATAGCAATGGA 618
|.||.|||.||||.||..|||||.|.||.||||||...||..|.||.|||
RBAM_013760__ 569 AGCCGCAAGTCGTCAAATCAATGGACCCGAATAAGCTGAACGGAAACGGA 618
BSNT_02340___ 619 AAAAACGGAGCGCTGCTTGATGAGAAGAAAAACTCCTCGCAAAGACCAAA 668
||.|.|||..|.||||||||.|||.|..|||||..|..|||||.||||||
RBAM_013760__ 619 AACAGCGGTTCACTGCTTGACGAGCATGAAAACAACAAGCAAAAACCAAA 668
BSNT_02340___ 669 AAATGACTTAACATATGATGAAATTTCCATTGTTTCTGAGCATTTAGAAG 718
||..|||.|.||||||||.|||.|||||.|.||.||.|||||..|..|||
RBAM_013760__ 669 AAGCGACCTGACATATGAAGAAGTTTCCGTCGTATCCGAGCACCTGAAAG 718
BSNT_02340___ 719 AACTTCCGGGAATCGATATCGTAAACGATTGGACACGAAAATATCCTTAT 768
|.||.||.||.||.||..|..|.||.||.|||||.||.||||||||.||.
RBAM_013760__ 719 AGCTCCCCGGCATTGACGTGATCAATGACTGGACGCGGAAATATCCATAC 768
BSNT_02340___ 769 GACAAAACCCTTTATTCTGTTTTCGGGGGCGTCACGACACCTGATCAGGG 818
||||||||.||.||.|||.|.|||||.||.||.||||||||.||.|||||
RBAM_013760__ 769 GACAAAACGCTGTACTCTCTGTTCGGCGGTGTGACGACACCGGAACAGGG 818
BSNT_02340___ 819 CCTGCTGAGCGACCGGAAAGATTTCTACTTAACAAGAGGCTA-----TGC 863
..||.||.||||.||||||||||..||..|.||||||||||| ||
RBAM_013760__ 819 ATTGTTGGGCGAACGGAAAGATTATTATGTCACAAGAGGCTACTCACTG- 867
BSNT_02340___ 864 GAATAATGACAGGGTGGGAAAAAGTTATTTAGAGTATCAATATGAAGAAT 913
||||||.|||||||.|||||.||..|.||.|||||.||||||||.|
RBAM_013760__ 868 ----AATGACCGGGTGGGTAAAAGCTACATTGAATATCAGTATGAAGACT 913
BSNT_02340___ 914 ATTTAAATTCGCATAAAGAAAAAGTGGAATACGTAGAAGATAATAAAGGA 963
|||||||..|.||||||||||||||.||.||.||.|||.|.|..|||||.
RBAM_013760__ 914 ATTTAAACGCACATAAAGAAAAAGTAGAGTATGTGGAAAACAGCAAAGGT 963
BSNT_02340___ 964 AATGTCGTCAGCCAAAAAACCATTGATAAGGGCAGCAGGGGATACGATCT 1013
.|.||||||||||||||..||.|.|||.|.||||||||.||.||||||||
RBAM_013760__ 964 GAGGTCGTCAGCCAAAAGCCCGTCGATGAAGGCAGCAGAGGCTACGATCT 1013
BSNT_02340___ 1014 TCAGCTTTCTTTTGACATGGAGCTTCAGGCAAAGGTAGAAAAGATCATTG 1063
.|||||.||..|.||.|||||..|.|||.|.||.||.|||||..||||||
RBAM_013760__ 1014 GCAGCTCTCGCTCGATATGGAATTACAGTCGAAAGTTGAAAAAGTCATTG 1063
BSNT_02340___ 1064 AAGAAGAAGTAAGAAACAGCCGTGCACGC-GGAAATTACATGCTTGACAG 1112
||.||||..|.||||..|||||.|| ||| ||.||.|..|||.|||||||
RBAM_013760__ 1064 AAAAAGAGCTGAGAAGAAGCCGCGC-CGCAGGCAACTTTATGGTTGACAG 1112
BSNT_02340___ 1113 AGCCTTTGCCGTAATGATGGACCCGAATAACGGCGATATTTTATCAATGG 1162
||..||||||||.||||||||||||||.|||||.||||||.|.|||||||
RBAM_013760__ 1113 AGGATTTGCCGTCATGATGGACCCGAACAACGGGGATATTCTCTCAATGG 1162
BSNT_02340___ 1163 CAGGGAAAAAGATAGATTTAAAAACCAACAAAATTGAAGATTATGCGATA 1212
|.||||||...||.|||.|..||||.||.||||...|.||||.||||||.
RBAM_013760__ 1163 CGGGGAAACGCATCGATCTCGAAACAAATAAAACACAGGATTTTGCGATC 1212
BSNT_02340___ 1213 GGGGCATTTACCACCCAATATGAAATGGGATCAGCAGTAAAGGGGGCCAC 1262
||.||||||||.|||||||||||.|||||.||..|.||.||.||.||.||
RBAM_013760__ 1213 GGAGCATTTACGACCCAATATGAGATGGGCTCTTCTGTTAAAGGAGCGAC 1262
BSNT_02340___ 1263 CGTGCTAGCCGGCTATCAGGACGGAATCCCGCATTATAAATATTTTGTTG 1312
.||.||.||.||.||.||...|||..||||||||||||||...|||||.|
RBAM_013760__ 1263 TGTTCTTGCGGGTTACCAAAGCGGCCTCCCGCATTATAAAACGTTTGTCG 1312
BSNT_02340___ 1313 ATACACCTCTTTA-TTTAGCAGGATACGGTAACAAACCGAAGAAATCCT- 1360
||.||||.|||.| |||| .|.||||.|...|| |||.|.||.|
RBAM_013760__ 1313 ATGCACCGCTTAAGTTTA----AAGACGGCACGGAA---AAGCACTCGTG 1355
BSNT_02340___ 1361 -ACATGAACATGGGAACCATCAATGAATTAACCGCTCTGCAAAAAAGTTC 1409
||| .|.|||||.|||||.|.|||..|.|||||.|||||||.||||||
RBAM_013760__ 1356 GACA--CAAATGGGGACCATTACTGAGCTGACCGCGCTGCAAAGAAGTTC 1403
BSNT_02340___ 1410 AAACGTATATATGTTTAATGTTGCCATGCACATTGCCGGTGTCACATACA 1459
||||.|||||||||||.||||.||||||||.||.||.||..|.||.|||.
RBAM_013760__ 1404 AAACATATATATGTTTCATGTGGCCATGCATATAGCGGGCATTACCTACG 1453
BSNT_02340___ 1460 AGCCGCATGGACCTCTTCCTGCTGACCAGA----AGGAT-TTAAACAAAA 1504
..|||||.|| |.|.||||.|.||.|| |.||| ||||| ||||
RBAM_013760__ 1454 TTCCGCACGG----CATGCTGCCGGCCGGATTAGACGATATTAAA-AAAA 1498
BSNT_02340___ 1505 TGAGAAATTACTACAGCCAATTTGGCCTGGGAGTAAAGACAGGTATCGAT 1554
||.|.||.||.|||..||||||||||.||||.||.|||||.||.||.|||
RBAM_013760__ 1499 TGCGCAACTATTACGCCCAATTTGGCTTGGGTGTGAAGACCGGGATTGAT 1548
BSNT_02340___ 1555 CTTCCGCAGGAATCAGCCGGAATGCAAACTACACCTGATGC----GGTAG 1600
|||||||||||||||||.||.|||||..|.|..|| || |||.|
RBAM_013760__ 1549 CTTCCGCAGGAATCAGCGGGCATGCAGTCAAATCC----GCAAATGGTCG 1594
BSNT_02340___ 1601 GGGGGTTAATTTTAGACTTGGCCATTGGACAATACGATACATATACACCG 1650
||||.|||.|..|.|||||.||.||.|||||.|..|||||.|||||.|||
RBAM_013760__ 1595 GGGGATTACTGCTTGACTTTGCGATCGGACAGTTTGATACGTATACGCCG 1644
BSNT_02340___ 1651 CTTCAAATGGCACAGTACATCTCATCAATTGCCAATGGGGGGTACCGCAT 1700
|||||||||||.||.||.||.|||.|.||.||.||.||.|||||.|||.|
RBAM_013760__ 1645 CTTCAAATGGCTCAATATATTTCAGCCATCGCAAACGGCGGGTATCGCGT 1694
BSNT_02340___ 1701 TCAGCCAAGAATTGTTACAAGTGTTCATGAGCC---CAGCAAAA--AAGA 1745
.|||||..|.||.||.|||||..|||||||.|| |||||||| ||||
RBAM_013760__ 1695 CCAGCCGCGGATCGTCACAAGCATTCATGAACCGGACAGCAAAAACAAGA 1744
BSNT_02340___ 1746 AGGCCTTGGGAAGACCATTGAACAAAGAAAGCCAAACATTCTCAACAA-- 1793
||||.||..|.||||||||..||.|....||.|||.|.|||||
RBAM_013760__ 1745 -----TTGGAAAAGCGATTGAACAGCGAGATATTAAAATTTTGAACAAAG 1789
BSNT_02340___ 1794 -AATTAACAACTCAGAAAGTGACATTCAGCAGGTGAAGACTGGAATGAAG 1842
||.|||||.|.| .||.||..||.|.||.||..|.|..|||||||||
RBAM_013760__ 1790 TAAATAACAGCCC---GAGCGATTTTGACCAAGTTCATAAAGGAATGAAG 1836
BSNT_02340___ 1843 CTAGTTAC-----CACTTC-AGGGACAGCT-----AAAAAT--ACGTTTA 1879
.|.||.|| |||.|| |||.||.||| ||.|.| |.|.||.
RBAM_013760__ 1837 TTGGTCACAAGCTCACCTCAAGGAACGGCTTATTCAACATTCCAAGGTTC 1886
BSNT_02340___ 1880 C--AGAAGATGTATCAGGGAAAACGGGAACAGCGGAAACATTTTACTACG 1927
| .|..|||||.||.||.|||||||||||.|||.|.||....||.||.|
RBAM_013760__ 1887 CGGCGCTGATGTTTCCGGAAAAACGGGAACCGCGCAGACGCACTATTATG 1936
BSNT_02340___ 1928 GCACGAATCGCAACTGGTGGGGGAAAAAAACATACAATCTGACTTTTGTC 1977
|||||||....||||||||||||.||.|.||.||.||.|||||.||||||
RBAM_013760__ 1937 GCACGAACAAAAACTGGTGGGGGCAAGAGACGTATAACCTGACCTTTGTC 1986
BSNT_02340___ 1978 GGCTATTACCCATCGAAAAATCCAAAAGTGGCTTTTAGTGTTGTTGTTCC 2027
||||||||.||.||..||.|||||..||||||.||.||.||.||.|||||
RBAM_013760__ 1987 GGCTATTATCCGTCAGAACATCCACGAGTGGCATTCAGCGTCGTCGTTCC 2036
BSNT_02340___ 2028 ATCAGT---AAATGATGATGATAAGATCAATAAAATTATTGCCAAAAGAG 2074
.||.|| |.|||||.|.|||.|.||||.|||||..||||||||..|||
RBAM_013760__ 2037 GTCTGTTCGAGATGATAAAGATCATATCAGTAAAAACATTGCCAAGGGAG 2086
BSNT_02340___ 2075 CTATCCACGCCTACGCAGAGCTCGAAAAAAAACACAGTAAAAAATAA 2121
|..|..||||.|||..||||||.|||||.|||.|||.||||||||||
RBAM_013760__ 2087 CAGTTGACGCTTACAAAGAGCTTGAAAAGAAATACAATAAAAAATAA 2133
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