Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02337 and RBAM_013720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:02
# Commandline: needle
# -asequence dna-align/BSNT_02337___ykwC.1.9828.seq
# -bsequence dna-align/RBAM_013720___ykwC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02337___ykwC-RBAM_013720___ykwC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02337___ykwC-RBAM_013720___ykwC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02337___ykwC
# 2: RBAM_013720___ykwC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 874
# Identity: 690/874 (78.9%)
# Similarity: 690/874 (78.9%)
# Gaps: 14/874 ( 1.6%)
# Score: 2658.5
#
#
#=======================================
BSNT_02337___ 1 TTGAAAAAAACAATTGGTTTTATCGGTCTTGGAGTGATGGGAAAGAGCAT 50
.||||.|||||..|.||.|||||||||.|.||.||.||||||||.||.||
RBAM_013720__ 1 GTGAACAAAACGGTCGGATTTATCGGTTTGGGCGTCATGGGAAACAGTAT 50
BSNT_02337___ 51 GGCATCACATATTCT-GAATGACGGCCACCCTGTTTTGGTGTACACCCGG 99
|||.||.||.|||.| ||| |..|||.|.||||||||.||.|||||.||.
RBAM_013720__ 51 GGCGTCGCACATTTTAGAA-GCGGGCTATCCTGTTTTAGTCTACACGCGT 99
BSNT_02337___ 100 ACAAAAGAAAAAGCAGAA-AGCATACTTCAAAAAGGCGCGATCTGGAAAG 148
||.|||.|||||||.||| || ||.||..|.||.||.|||.|||||.|.|
RBAM_013720__ 100 ACGAAACAAAAAGCGGAAGAG-ATTCTGAATAAGGGAGCGGTCTGGCAGG 148
BSNT_02337___ 149 ATACGGTCAAAGATCTTTCGAAAG-AAGCGGATGTCATCATTACAATGGT 197
|.|||||||||||.||||| |.|| ||||.||..|.||.|||||.|||||
RBAM_013720__ 149 AGACGGTCAAAGACCTTTC-AGAGAAAGCTGACATTATTATTACCATGGT 197
BSNT_02337___ 198 CGGCTATCCCAGTGATGTTGAAGAAGTGTATTTCG--GAAGCAATGGAAT 245
|||||||||.||||||||.||.|||.|.|||.||| ||| ||.||.||
RBAM_013720__ 198 CGGCTATCCGAGTGATGTCGAGGAAATCTATCTCGGCGAA--AACGGCAT 245
BSNT_02337___ 246 TATTGAAAACGCAAAAGAAGGCGCATATCTTATTGATATGACGACATCTA 295
|.|.....|||||||||||||.||.|.|.|.|||||.|||||||||||.|
RBAM_013720__ 246 TCTCCGGCACGCAAAAGAAGGGGCGTTTGTCATTGACATGACGACATCAA 295
BSNT_02337___ 296 AGCCTTCGCTTGCGAAGAAGATTGCTGAAGCGGCCAAAGAAAAAG--CAT 343
|.||.||.||.|||||.||||||||.||....||||||| ||||| |||
RBAM_013720__ 296 AACCGTCTCTGGCGAAAAAGATTGCGGAGAAAGCCAAAG-AAAAGTCCAT 344
BSNT_02337___ 344 TGTTCGCTTTAGACGCTCCTGTTTCCGGTGGAGACGTCGGTGCACAAAAC 393
| ..|||.||.||.||.||||||||||||||||||.||||.||....|||
RBAM_013720__ 345 T-CACGCCTTGGATGCACCTGTTTCCGGTGGAGACATCGGCGCGAGGAAC 393
BSNT_02337___ 394 GGAACACTCGCGATTATGGTCGGTGGAGAAAAAGAAGCTTTTGAAGCCTG 443
|||||.||.||.|||||||.|||.||||||||||||||.||||||||.||
RBAM_013720__ 394 GGAACGCTTGCCATTATGGCCGGAGGAGAAAAAGAAGCGTTTGAAGCATG 443
BSNT_02337___ 444 CATGCCGATTTTCTCTTTAATGGGAGAGAATATTCAGTATCAAGGATCGG 493
|.|||||.|||||||..|.|||||.||.||.||||||||||||||..|||
RBAM_013720__ 444 CCTGCCGCTTTTCTCCGTTATGGGGGAAAACATTCAGTATCAAGGGCCGG 493
BSNT_02337___ 494 CTGGAAGCGGACAGCATACCAAGATGTGCAATCAGATTGCAATTGCAGCC 543
|.||.|||||.||||||||.||.||||||||||||||.||.||||||||.
RBAM_013720__ 494 CCGGCAGCGGCCAGCATACGAAAATGTGCAATCAGATCGCGATTGCAGCG 543
BSNT_02337___ 544 GGTATGATCGGTGTTGCTGAAGCGATGGCTTATGCCCAAAAATCAGGTCT 593
||.|||.||||.||.|||||||||||||||||.||..|||||||.|||||
RBAM_013720__ 544 GGAATGGTCGGAGTGGCTGAAGCGATGGCTTACGCTGAAAAATCCGGTCT 593
BSNT_02337___ 594 AGAGCCGGAAAATGTTCTGAAAAGCATCACAACGGGCGCAGCCGGAAGCT 643
..|.||||||.|.||.|||||||||||.|||||.||.||.||.||.||||
RBAM_013720__ 594 GAACCCGGAACAAGTGCTGAAAAGCATTACAACCGGAGCGGCTGGCAGCT 643
BSNT_02337___ 644 GGTCATTGTCAAATCTTGCTCCCCGTATGCTGCAAGGCAACTTTGAACCG 693
|||||.||||||||||.|||||||||||||||.|||||.|.||||..||.
RBAM_013720__ 644 GGTCACTGTCAAATCTCGCTCCCCGTATGCTGAAAGGCGATTTTGCGCCC 693
BSNT_02337___ 694 GGATTTTATGTGAAGCATTTTATTAAGGATATGGGAATTGCACTAGAGGA 743
|||||.||.|||||.||.||||||||.||.||||||||.||.||.||.||
RBAM_013720__ 694 GGATTCTACGTGAAACACTTTATTAAAGACATGGGAATCGCCCTTGAAGA 743
BSNT_02337___ 744 AGCAGAATTAATGGGGGAAGAAATGCCAGGCTTGTCGCTCGCAAAATCCT 793
|||.||..|.|||||.|||||||||||.||.|||.||||.||.|||||.|
RBAM_013720__ 744 AGCGGAGCTGATGGGAGAAGAAATGCCCGGATTGGCGCTGGCCAAATCAT 793
BSNT_02337___ 794 TATATGACAAGCTAGCTGCTCAAGGTGAAGAAAACAGCGGAACACAGAGT 843
||||.||||||||..|.||.|||||||||||||||||||||||.||.|||
RBAM_013720__ 794 TATACGACAAGCTTTCCGCGCAAGGTGAAGAAAACAGCGGAACTCAAAGT 843
BSNT_02337___ 844 ATATATAAGCTTTGGGTGAAATAA 867
||.|||||||||||||||||||||
RBAM_013720__ 844 ATTTATAAGCTTTGGGTGAAATAA 867
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