Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02320 and RBAM_013620
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:01
# Commandline: needle
# -asequence dna-align/BSNT_02320___ykvW.1.9828.seq
# -bsequence dna-align/RBAM_013620___ykvW.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02320___ykvW-RBAM_013620___ykvW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02320___ykvW-RBAM_013620___ykvW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02320___ykvW
# 2: RBAM_013620___ykvW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1981
# Identity: 1424/1981 (71.9%)
# Similarity: 1424/1981 (71.9%)
# Gaps: 134/1981 ( 6.8%)
# Score: 4905.0
#
#
#=======================================
BSNT_02320___ 1 ATGAATGAACAAGTTATCGTTCAACGCGACCCGCACGAGCCATTGAAAAC 50
||||||||||||||.|| |||.|..|| |||||.|.|||
RBAM_013620__ 1 ATGAATGAACAAGTGAT----------GACACAAAC---CCATTCACAAC 37
BSNT_02320___ 51 AG-----ACAAGAGG--------GAAAAAAACTGGGCACAGCACGCGGAG 87
|| ||||||.| |.||||||.|||...|||||.||.||.
RBAM_013620__ 38 AGCACATACAAGAAGAGCGGGCCGGAAAAAAGTGGCTCCAGCATGCAGAA 87
BSNT_02320___ 88 CTTATTGCTGCACTTGTATCAGGCGCTCTTATTTTGGCAGGCTGGCTCTT 137
||.|||||.||.||.|||||.||||..||||||.|.||.|.||||.|.||
RBAM_013620__ 88 CTCATTGCGGCGCTCGTATCCGGCGTCCTTATTCTTGCGGCCTGGTTTTT 137
BSNT_02320___ 138 ATCCG-GATATCAGGTATTATCCATAATACTTT-TCT-TGCTGGCTTTTG 184
..||| .|.|..||| ..|.|||.| .||||| |.| |.||.||.||..
RBAM_013620__ 138 TACCGAAACAAAAGG-CCTGTCCGT--CACTTTGTATATCCTTGCCTTCC 184
BSNT_02320___ 185 TGATCGGCGGATTTGCTAAAGCAAAGGAAGGAATCGAAGAAACACTCGAA 234
|||||||.||||||||.|||||.||.||.|||||.||.||.||..|.||.
RBAM_013620__ 185 TGATCGGGGGATTTGCAAAAGCGAAAGAGGGAATTGAGGATACCATTGAG 234
BSNT_02320___ 235 TCCAAAACGCTGAATGTAGAACTTTTAATGATTTTCGCTGCCGTTGGTTC 284
.|.||..||.|.|||||.|||||..|.||||||||.|||||.||.||.||
RBAM_013620__ 235 ACGAAGGCGTTAAATGTGGAACTGCTGATGATTTTTGCTGCTGTCGGCTC 284
BSNT_02320___ 285 CGCCTTGATCGGATACTGGGCAGAGGGTGCTATTTTAATATTTATTTTTT 334
||||.|||||||.||.|||||.||.||.|||.||.|.||.||||||||||
RBAM_013620__ 285 CGCCCTGATCGGTTATTGGGCTGAAGGCGCTGTTCTTATCTTTATTTTTT 334
BSNT_02320___ 335 CCTTAAGCGGAGCTTTAGAAACATACACGATGAATAAAAGCAGCAGAGAT 384
|.||||||||.||..|.||||||||.||||||||||||||||||.|.|||
RBAM_013620__ 335 CGTTAAGCGGCGCGCTCGAAACATATACGATGAATAAAAGCAGCCGTGAT 384
BSNT_02320___ 385 TTAACGTCTTTAATGCAGCTTGAGCCTGAAGAAGCGACATT-------GA 427
|||||.|||||||||.|.||.||.||.||.|||||||||.| ||
RBAM_013620__ 385 TTAACATCTTTAATGAAACTGGAACCGGAGGAAGCGACACTGCTTGCGGA 434
BSNT_02320___ 428 TGGTCAATGGTGAAACCAAAAGAGTTCCGGTTTCAG-ACTTGCAGGCCGG 476
.||.| |.||| ||..|.||.||||.|.|.| |||| .||..|||
RBAM_013620__ 435 CGGAC----GGGAA---AAGCGGGTGCCGGCTGCTGAACTT-AAGATCGG 476
BSNT_02320___ 477 TGATATGATTGTGATCAAACCTGGAGAACGCGTAGCGGCAGACGGTATCA 526
|||.|||||.||.||.||.||.||.|||||||||||.||||||||.||||
RBAM_013620__ 477 TGACATGATCGTCATTAAGCCGGGCGAACGCGTAGCAGCAGACGGGATCA 526
BSNT_02320___ 527 TTGAATCGGGCTCGACAAGTCTTGACGAGTCGGCTTTAACAGGTGAATCA 576
||||.||.|||..|||.||.||.||.||.|||||..|.||.||||||.|.
RBAM_013620__ 527 TTGAGTCTGGCGTGACGAGCCTCGATGAATCGGCGCTTACGGGTGAAGCG 576
BSNT_02320___ 577 ATGCCTGTAGAAAAAAACAG-AGGCGACGCTGTATTCACAGGAACGGTGA 625
||||| |..|.||||||||| .||.||..||||.||.|||||||||||.|
RBAM_013620__ 577 ATGCC-GGCGGAAAAAACAGCCGGAGATTCTGTGTTTACAGGAACGGTAA 625
BSNT_02320___ 626 ATCGCAATGGCTCCTTGACTGTCCGTGTCACGAAAGCAAATGAAGATTCG 675
|..|.||.||||||||.||.||.|||||.||||||.||||||||.|.||.
RBAM_013620__ 626 ACGGAAACGGCTCCTTAACGGTTCGTGTGACGAAAACAAATGAACAGTCT 675
BSNT_02320___ 676 TTATTCAGAAAAATTATCAAACTGGTTGAATCAGCGCAAAATAGTGTTTC 725
||||||||||||||.||....|||||.||||||||.|||||.||.||.||
RBAM_013620__ 676 TTATTCAGAAAAATCATTCGGCTGGTGGAATCAGCCCAAAACAGCGTGTC 725
BSNT_02320___ 726 ACCCGCTCAGGCTTTCATCGAACGATTTGAAAATGCTTATGTGAAAGGTG 775
|||.||||||||.||.||.|||||.||.||||.||..|||||.|||||.|
RBAM_013620__ 726 ACCGGCTCAGGCATTTATTGAACGGTTCGAAAGTGTCTATGTCAAAGGCG 775
BSNT_02320___ 776 TGCTAATTGCGGTGGCGCTCCTTTTATTCGTCCCGCACTTTGCGCTGGGC 825
||||..|.||.|||||..|.|||||||||.|.||.||.||.||..|.|||
RBAM_013620__ 776 TGCTGTTAGCCGTGGCTTTGCTTTTATTCATTCCTCATTTCGCTTTAGGC 825
BSNT_02320___ 826 TGGAGCTGGAGTGAAACCTTCTACCGCGCAATGGTGTTTATGGTTGTCGC 875
||||||||||||||||||||.|||.|.||.||||||||||||||.|||||
RBAM_013620__ 826 TGGAGCTGGAGTGAAACCTTTTACAGGGCGATGGTGTTTATGGTGGTCGC 875
BSNT_02320___ 876 GTCACCTTGTGCGCTTGTCGCCTCTATTATGCCGGCGGCGCTGTCCCTGA 925
.||.||.||.||.||||||||.|||||||||||.||.|||||.|||||.|
RBAM_013620__ 876 CTCCCCGTGCGCACTTGTCGCTTCTATTATGCCCGCTGCGCTTTCCCTTA 925
BSNT_02320___ 926 TTTCAAATGGCGCCCGCAACGG--TATGCTTGTGAAAGGAAGCGTCTTTC 973
|.||||||||.||||||||||| ||| |.||.||||||||.||.|||.
RBAM_013620__ 926 TCTCAAATGGTGCCCGCAACGGATTAT--TGGTTAAAGGAAGTGTGTTTT 973
BSNT_02320___ 974 TTGAACAGCTGGGCTCAGTGCAAATGATCGCCTTTGATAAAACCGGCACT 1023
|.||.||||||||....||.|..||||||||.|||||.|||||||||||.
RBAM_013620__ 974 TAGAGCAGCTGGGAAGCGTACGGATGATCGCATTTGACAAAACCGGCACG 1023
BSNT_02320___ 1024 GTAACAAAAGGCCAGCCTGCCGTAGAGACGATTAGAA--TAGCAGAAGGA 1071
||.|||||.||.|||||.||.||.|.|.| |||..|| | ||.||| .|
RBAM_013620__ 1024 GTCACAAAGGGACAGCCGGCAGTCGCGGC-ATTTCAAGCT-GCGGAA-CA 1070
BSNT_02320___ 1072 T-TCAGTGAAGCGGAAGTTCTTG-AGGCTGTCTATGCCATCGAAATGCAA 1119
| |.|||||||..| ||.||.|| ||||.||.|||||.||.||||.||||
RBAM_013620__ 1071 TGTAAGTGAAGATG-AGATCATGCAGGCGGTGTATGCAATGGAAAAGCAA 1119
BSNT_02320___ 1120 TCAAGCCATCCGCTCGCCCAAGCCATAACGGCGTACGCTGAAAGCCGCGG 1169
||||||||.||.||.||..||||.|||.|.|..|..||.||||||||.||
RBAM_013620__ 1120 TCAAGCCACCCTCTTGCAAAAGCGATAGCTGAATTTGCCGAAAGCCGGGG 1169
BSNT_02320___ 1170 CGTGAATCAGTCCG-----GC--TACA--TATCTATAGAAGAAACCTCAG 1210
|| ||| || .||| ||||.||.||.||.||.||.|
RBAM_013620__ 1170 CG---------CCGCGCCCGCAGGACATCTATCGATTGACGAGACGTCCG 1210
BSNT_02320___ 1211 GGTTTGGCGTTATGGC------AGAAGTGTCGGGTGCG--AAATGGAAGG 1252
|.||.||.|||..||| ||||| ||| |||||||.||
RBAM_013620__ 1211 GATTCGGTGTTCAGGCTGAAATAGAAG--------GCGTCAAATGGATGG 1252
BSNT_02320___ 1253 TCGGTAAAGCAGGTTTTATCGGCGAGGAAATGGCAGCACAA----TTTTT 1298
||||.|||||.||.|||...||.||.||...||||| | |||||
RBAM_013620__ 1253 TCGGAAAAGCGGGGTTTGCAGGTGAAGATGCGGCAG----ATGCTTTTTT 1298
BSNT_02320___ 1299 G-AAACA-----AACAGCATCAGATGTCATTCAAAGCGGTCATACAATTG 1342
| |.||| ||.||.||.|.|.| || ||| |||..||||.|.|
RBAM_013620__ 1299 GCAGACATCGGGAAAAGAATTAAAGG--AT--AAA--GGTTTTACACTGG 1342
BSNT_02320___ 1343 TATTTGTGAAAAAGGATGATCAAATAGCAGGCTGTATCGCACTGAAGGAC 1392
|.|||||.|||||.|||||.|..||.||.|||||..|.||..|.|||||.
RBAM_013620__ 1343 TCTTTGTTAAAAAAGATGACCGGATTGCGGGCTGCTTTGCCTTAAAGGAT 1392
BSNT_02320___ 1393 CAAATCAGGCCTGAAGCAAAAGAGGTCATGGAAGAAC-TGAACCGACTTG 1441
||||||.|.||||||||.||||..||.||||..||.| ||||.| |||.|
RBAM_013620__ 1393 CAAATCCGACCTGAAGCCAAAGCCGTGATGGCTGAGCTTGAATC-ACTGG 1441
BSNT_02320___ 1442 GGATTAAAACGGCCATGCTGACAGGAGATCA---CGAAGAC-ACGGCTCA 1487
|.||||||||.||||||||.||.||.||||| .||| || .|||||
RBAM_013620__ 1442 GCATTAAAACAGCCATGCTCACCGGCGATCAGTCTGAA-ACTGCGGCT-- 1488
BSNT_02320___ 1488 AGCGATTGCCAAGGAAGCCGGCATGACAACTGTCGTAGCAGAATGCCTGC 1537
||.|||||.||.||.||.||||||||.||.||.||.||.||.||.||||
RBAM_013620__ 1489 -GCCATTGCAAAAGAGGCGGGCATGACGACGGTTGTTGCCGATTGTCTGC 1537
BSNT_02320___ 1538 CTGACCAAAAAGTGAATGAAATCAAACGGTTAAAAGAAGAATTCGGAACG 1587
|.||||||||.|..||.|||.|.||...|.|.||||||...|.|||.||.
RBAM_013620__ 1538 CGGACCAAAAGGCAAAAGAAGTGAAGAAGCTGAAAGAAACGTACGGCACA 1587
BSNT_02320___ 1588 ATTGCAATGGTGGGTGACGGAATCAATGATGCGCCGGCGCTCAAAGCGGC 1637
||.||.||||||||.|||||.||.|||||.|||||.||.||.|||.|.||
RBAM_013620__ 1588 ATCGCCATGGTGGGGGACGGCATTAATGACGCGCCCGCTCTGAAAACCGC 1637
BSNT_02320___ 1638 GGATGTCGGCATTGCGATGGGCGGCGGAACAGATGTAGCACTTGAGACCG 1687
.||.|||||.||||||||||||||.|||||.||.||.||.|||||.||.|
RBAM_013620__ 1638 TGACGTCGGTATTGCGATGGGCGGGGGAACGGACGTGGCCCTTGAAACGG 1687
BSNT_02320___ 1688 CTGATATGGTCCTCATGAAAAACGATTTGAAAAAGCTCGTAAACATGTGC 1737
||||..|.|||||.||||||||.|||.|..|.|||||.||.||.||||||
RBAM_013620__ 1688 CTGACTTAGTCCTTATGAAAAATGATCTTCACAAGCTTGTGAAAATGTGC 1737
BSNT_02320___ 1738 CGCTTGTCTCGGAAAATGAACAGGATTATCAAACAAAATATCGTGTTTTC 1787
.|..|.||..|||||||||||.|||||||.||.||.||||| |||||||
RBAM_013620__ 1738 AGACTCTCAAGGAAAATGAACCGGATTATTAAGCAGAATAT--TGTTTTC 1785
BSNT_02320___ 1788 TCTAGCT----GTAATCTGCCTGCTGATTTGTGCAAACTTTTTGCAGGTG 1833
|| ||| ||.||||||||..||||.||.||.||||||.||||||||
RBAM_013620__ 1786 TC--GCTCTCGGTCATCTGCCTTTTGATCTGCGCCAACTTTCTGCAGGTG 1833
BSNT_02320___ 1834 ATGGAATTGCCATTTGGCGTGATTGGTCATGAGGGCAGCACGATTTTGGT 1883
||||||.||||.|||||||||||.||.||||||||.|||||||||.||||
RBAM_013620__ 1834 ATGGAACTGCCGTTTGGCGTGATCGGGCATGAGGGGAGCACGATTCTGGT 1883
BSNT_02320___ 1884 CATACTAAACGGTTTAAGACTCCTAAAATAA 1914
|||.||.|||||..|.|||.|..||||||||
RBAM_013620__ 1884 CATTCTGAACGGACTGAGATTATTAAAATAA 1914
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