Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02316 and RBAM_013610

See Amino acid alignment / Visit BSNT_02316 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:01
# Commandline: needle
#    -asequence dna-align/BSNT_02316___ykvV.1.9828.seq
#    -bsequence dna-align/RBAM_013610___stoA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02316___ykvV-RBAM_013610___stoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02316___ykvV-RBAM_013610___stoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02316___ykvV
# 2: RBAM_013610___stoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 518
# Identity:     364/518 (70.3%)
# Similarity:   364/518 (70.3%)
# Gaps:          43/518 ( 8.3%)
# Score: 1212.0
# 
#
#=======================================

BSNT_02316___      1 ATGTTGACGAAGCGC----TTGCTTACTATATACATTATGTTATTAGGGT     46
                     |||...|..||.|||    |||     |||.|.||    ||..||    |
RBAM_013610__      1 ATGCATAAAAACCGCCTAATTG-----TATGTGCA----GTCCTT----T     37

BSNT_02316___     47 TGATTGCATG-----GTTTCCATG--TGCGGCACAAGC----TGAGGAAA     85
                     ||||.|| ||     ||.|..|||  ||..|||.||||    |.| ||||
RBAM_013610__     38 TGATAGC-TGCCGCCGTCTGGATGCCTGAAGCAAAAGCCTCATCA-GAAA     85

BSNT_02316___     86 AACAGCCTGCTGTTCCCGCTGTTTTTCTTATGAAAACGATAGAAGGGGAG    135
                     |||||   ||.||||||||.||.|||||.|||||.|||||.|||||.||.
RBAM_013610__     86 AACAG---GCAGTTCCCGCCGTGTTTCTGATGAAGACGATTGAAGGAGAC    132

BSNT_02316___    136 GACATCTCGATTCCGAATAAAGGGCAAAAAACAATTCTCCATTTTTGGAC    185
                     ||.||.||||||||||||||||||||.|||||.|||.|.|||||||||||
RBAM_013610__    133 GAGATATCGATTCCGAATAAAGGGCAGAAAACGATTTTGCATTTTTGGAC    182

BSNT_02316___    186 GTCATGGTGTCCGCCCTGCAAAAAGGAGCTTCCACAGTTTCAATCGTTTT    235
                     .||.|||||||||||.||||||||.||.||.||.|||||.|||.|||.||
RBAM_013610__    183 ATCGTGGTGTCCGCCGTGCAAAAAAGAACTGCCTCAGTTCCAAACGTATT    232

BSNT_02316___    236 ATGATGCCCATCCATCCGACAGTGTAAAGCTGGTAACGGTGAATTTAGTG    285
                     ||||....||||..||||....|||||..||.||||||||.|||||..||
RBAM_013610__    233 ATGAACAGCATCAGTCCGGTGATGTAAGCCTTGTAACGGTAAATTTGATG    282

BSNT_02316___    286 AATTCGGAACAAAATCAGCAAGT--CGTTGAAGACTTTATTA--AAGCA-    330
                     |||.|.||.|.||||.|  ||.|  ||||.||.|||||.|.|  .|||| 
RBAM_013610__    283 AATGCCGAGCGAAATAA--AAATTCCGTTCAAAACTTTGTCAGTCAGCAC    330

BSNT_02316___    331 AATAAGCTGACGTTTCCAATTGTCCTTGACTCAAAAGGGGAATTGATGAA    380
                     .||   ||.||.||.||.|||||.||||||.|.|||||.||..|.|||||
RBAM_013610__    331 CAT---CTCACTTTCCCGATTGTTCTTGACACGAAAGGCGAGCTTATGAA    377

BSNT_02316___    381 GGAGTATCATATCATCACGATCCCAACATCATTTTTGCTGAATGAAAAGG    430
                     |||.||..||.||||.|||||.||.||.||||||.|||||||||||||.|
RBAM_013610__    378 GGAATACGATGTCATGACGATTCCCACGTCATTTCTGCTGAATGAAAAAG    427

BSNT_02316___    431 GAGAAATTGAAAAAACAAAAATTGGCCCGATGACGGCGGAACAACTGAAG    480
                     |||||||.|||||||..|...|.||.||||||||.||...||||.|.||.
RBAM_013610__    428 GAGAAATCGAAAAAAAGATCGTCGGTCCGATGACCGCCTCACAATTAAAA    477

BSNT_02316___    481 GAATGGACGGAAGAATAG    498
                     ||||||.|.||..||||.
RBAM_013610__    478 GAATGGTCAGAGAAATAA    495


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