Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02310 and RBAM_013560

See Amino acid alignment / Visit BSNT_02310 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:00
# Commandline: needle
#    -asequence dna-align/BSNT_02310___ykvR.1.9828.seq
#    -bsequence dna-align/RBAM_013560___ykvR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02310___ykvR-RBAM_013560___ykvR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02310___ykvR-RBAM_013560___ykvR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02310___ykvR
# 2: RBAM_013560___ykvR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 313
# Identity:     177/313 (56.5%)
# Similarity:   177/313 (56.5%)
# Gaps:          59/313 (18.8%)
# Score: 500.0
# 
#
#=======================================

BSNT_02310___      1 GTGAAGACATTGCGGTTAAACAATGTAACGTTAGAAATGGCTGCATATCA     50
                     .||.||.|.||...|||||||..|||||.|.|..|||||..||..|.|.|
RBAM_013560__      1 ATGGAGCCGTTAGAGTTAAACGGTGTAAGGCTGAAAATGTATGATTGTAA     50

BSNT_02310___     51 AGAGGAGAGCGAGCCGAAGCGAAAA-----------ATTGCATTTACCTT     89
                     ||| .||.|||.||       ||||           |||.|||||...||
RBAM_013560__     51 AGA-AAGTGCGGGC-------AAAAACGGCCGCATGATTTCATTTGTATT     92

BSNT_02310___     90 AAACGTTACGAGTGAGACTTACCATGATATCGCTGTCCTGTTGTATGAAA    139
                     .||.||.||...|||.||.||.||||||||.||.|||||.||||||||||
RBAM_013560__     93 GAAGGTGACCTCTGAAACGTATCATGATATTGCCGTCCTTTTGTATGAAA    142

BSNT_02310___    140 AAACGTTTAATGTCGAGGTTCCGGAACGCGGTCTTGCCTTCCGGGGGAAA    189
                     ||||.|||.|..||.|||..||.||.||.||.||||..|||||.||.|||
RBAM_013560__    143 AAACATTTGACATCAAGGCGCCCGAGCGTGGGCTTGAATTCCGCGGTAAA    192

BSNT_02310___    190 ATGACAAATTATTCAACATCATTGACCAACCTGTACGA----------AC    229
                     ||.||.||..|.|..|||||..|.||.||.||.|||.|          ||
RBAM_013560__    193 ATAACCAACCACTATACATCCGTCACAAATCTTTACAATAAAGATGAGAC    242

BSNT_02310___    230 CGGGGGCCGTCAGCGAGTTCTATATAGAAATAACGGAAAT-AGACAAAAA    278
                     .|          |.||.||.|.|.|||||||.||.||.|| .||      
RBAM_013560__    243 AG----------GTGATTTTTTTGTAGAAATGACCGAGATCTGA------    276

BSNT_02310___    279 CGCCGATTCATGA    291
                                  
RBAM_013560__    276 -------------    276


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