Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02309 and RBAM_013520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:00
# Commandline: needle
# -asequence dna-align/BSNT_02309___ykvM.1.9828.seq
# -bsequence dna-align/RBAM_013520___ykvM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02309___ykvM-RBAM_013520___ykvM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02309___ykvM-RBAM_013520___ykvM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02309___ykvM
# 2: RBAM_013520___ykvM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity: 420/498 (84.3%)
# Similarity: 420/498 (84.3%)
# Gaps: 3/498 ( 0.6%)
# Score: 1800.0
#
#
#=======================================
BSNT_02309___ 1 ATGACGACAAGAAAAGAATCAGAATTAGAAGGTGTAACATTGTTAGGCAA 50
|.|||||||||||||||||||||||||||.||.||..|..|.||.||
RBAM_013520__ 1 ---ATGACAAGAAAAGAATCAGAATTAGAAGGAGTTACGCTCCTGGGGAA 47
BSNT_02309___ 51 CCAAGGTACAAATTATTTGTTCGAATATGCACCGGACGTGCTGGAATCCT 100
.|||||.|||||.|||||.||.||||||||.|||||.||..|||||||.|
RBAM_013520__ 48 TCAAGGGACAAACTATTTATTTGAATATGCGCCGGAGGTTTTGGAATCAT 97
BSNT_02309___ 101 TCCCGAATAAACATGTAAACCGTGATTACTTTGTAAAATTCAATTGTCCG 150
|.|||||||||||.||.|||||||||||.||.||.||||||||.||.|||
RBAM_013520__ 98 TTCCGAATAAACACGTGAACCGTGATTATTTCGTTAAATTCAACTGCCCG 147
BSNT_02309___ 151 GAATTCACATCTTTATGTCCTAAAACAGGACAGCCTGACTTTGCGACAAT 200
|||||.||.||..|.||.||.|||||.||||||||.||.|||||.||.||
RBAM_013520__ 148 GAATTTACGTCGCTTTGCCCGAAAACGGGACAGCCGGATTTTGCAACCAT 197
BSNT_02309___ 201 CTACATCAGCTACATTCCTGATGAAAAAATGGTTGAAAGCAAATCATTAA 250
||||||||||||.|||||.||.|||||||||||.|||||||||||..|.|
RBAM_013520__ 198 CTACATCAGCTATATTCCGGACGAAAAAATGGTGGAAAGCAAATCGCTGA 247
BSNT_02309___ 251 AGCTGTATCTATTCAGCTTCAGAAACCATGGTGACTTCCACGAAGACTGC 300
||||||||||.|||||||||.|.|||||.||.||.||||||||.||||||
RBAM_013520__ 248 AGCTGTATCTTTTCAGCTTCCGCAACCACGGAGATTTCCACGAGGACTGC 297
BSNT_02309___ 301 ATGAACATCATCATGAATGACTTGATTGAATTAATGGACCCGCGCTACAT 350
||||||||||||||||||||.|||||.||||||||||||||.||||||||
RBAM_013520__ 298 ATGAACATCATCATGAATGATTTGATCGAATTAATGGACCCCCGCTACAT 347
BSNT_02309___ 351 CGAAGTATGGGGCAAATTCACGCCAAGAGGCGGAATTTCCATTGACCCGT 400
.|||||||||||||||||||||||.|||||||||||.|||||||||||||
RBAM_013520__ 348 TGAAGTATGGGGCAAATTCACGCCTAGAGGCGGAATCTCCATTGACCCGT 397
BSNT_02309___ 401 ACACTAACTACGGAAAGCCTGGCACGAAGTATGAAAAAATGGCCGAATAC 450
|.||.||||||||.|..||.||.||.||.||||||||||||||||||.|.
RBAM_013520__ 398 ATACAAACTACGGCAGACCGGGAACAAAATATGAAAAAATGGCCGAACAT 447
BSNT_02309___ 451 CGTATGATGAACCATGATTTGTATCCGGAGACGATTGATAATCGTTAA 498
||.||||||||.||||||.||||.||||||||||||||||||||.|||
RBAM_013520__ 448 CGGATGATGAATCATGATATGTACCCGGAGACGATTGATAATCGGTAA 495
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