Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02304 and RBAM_013470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:00
# Commandline: needle
# -asequence dna-align/BSNT_02304___ykvI.1.9828.seq
# -bsequence dna-align/RBAM_013470___ykvI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02304___ykvI-RBAM_013470___ykvI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02304___ykvI-RBAM_013470___ykvI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02304___ykvI
# 2: RBAM_013470___ykvI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1079
# Identity: 764/1079 (70.8%)
# Similarity: 764/1079 (70.8%)
# Gaps: 76/1079 ( 7.0%)
# Score: 2591.5
#
#
#=======================================
BSNT_02304___ 1 ATGGAACAATCAAAAGGGTCTGCAAGTCAGCTTGCTTTTGTGTATGTCGG 50
||||.||||.|||||||.|||||||||||||||||.|||||.||.||.||
RBAM_013470__ 1 ATGGGACAAACAAAAGGTTCTGCAAGTCAGCTTGCATTTGTATACGTAGG 50
BSNT_02304___ 51 CACAGTAGTCGGAGCTGGATTTGCGACTGGGA-GGGAAATTGTTGAGTTT 99
|||.||.||.|||||.||.|||||.|| |||| |||||||.|||||||||
RBAM_013470__ 51 CACGGTTGTAGGAGCCGGTTTTGCCAC-GGGACGGGAAATCGTTGAGTTT 99
BSNT_02304___ 100 TTTCTGAAGTTCGGCTGGTTCGGTTTATTCGGCATTCTCGTCAGCGG-CG 148
|||||||||||.||||||.|||||.|.|||||.||..|.||.||||| |.
RBAM_013470__ 100 TTTCTGAAGTTTGGCTGGATCGGTCTGTTCGGTATCGTGGTAAGCGGTCT 149
BSNT_02304___ 149 GAATGTTTACGTTTCTGGGCGCCAAGCTGATGATCATTTCAAAGCGAATC 198
| ||||||||.|.|.|.||||||||..|.|||||||||||.||.||.||.
RBAM_013470__ 150 G-ATGTTTACATATTTAGGCGCCAAAATCATGATCATTTCCAAACGGATT 198
BSNT_02304___ 199 AATGCCAAG--TCATACCAAGAAATGAACATCTTTTTGTTCGG------- 239
.|||| || ||.||.||.|||.||||||..|.|||.||.||
RBAM_013470__ 199 CATGC--AGCATCTTATCAGGAATTGAACACATATTTATTTGGCAAGTCC 246
BSNT_02304___ 240 ---GGCGGCGGCTGGGCGGATTATCAATGTATTTATGCTGTTTGTTCTCC 286
|||.|||.| .|.|||.|.||||||.|||||.|..|.|
RBAM_013470__ 247 ATCGGCCGCGCC----------GTTAATATGTTTATGATGTTTATATTGC 286
BSNT_02304___ 287 TCGGAGTTACATCTGTCATGCTTTCAGGAGCAGGGGCGCTTTTTGAGGAA 336
|.|||||.||.|||||||||||.||.|||||.||.|||||.|||.|.|||
RBAM_013470__ 287 TGGGAGTGACCTCTGTCATGCTCTCCGGAGCGGGAGCGCTGTTTCATGAA 336
BSNT_02304___ 337 CAATTGGGGATGTCCGCTCAGATTGGGATGCTTATTACAATCGGTCTGAG 386
||..|.||...||||||.||....|||||.|||.|.||.||||..|||||
RBAM_013470__ 337 CAGCTTGGCTGGTCCGCACAAGCGGGGATCCTTTTGACGATCGTACTGAG 386
BSNT_02304___ 387 CTTAATTGTGATGACTAGAGGAGTAAAAGGCATTTTCGGTGTCAATGTGT 436
|||....||.|||||.||.||.||.|||||..|.|||||.||||||.|.|
RBAM_013470__ 387 CTTTGCCGTCATGACAAGCGGCGTTAAAGGTGTGTTCGGCGTCAATATAT 436
BSNT_02304___ 437 TTGTTGTTCCCCTTTTAA-----TCCTCTTTTCAATGATTGTGGTGGCCG 481
|.|||||.||.||||||| |.||||||| ||.|||...||.|
RBAM_013470__ 437 TGGTTGTGCCGCTTTTAATTTCCTTCTCTTTT-----ATCGTGACAGCTG 481
BSNT_02304___ 482 ACTCTTTTATATTCAGCGAATCAC--GAAACGCAGCTCAGTGGGTTTGGC 529
|.||.|||.||||.| .||.||| |||||||.|...|.|||||.||||
RBAM_013470__ 482 ATTCATTTGTATTTA--CAAGCACGAGAAACGCGGACGAATGGGTATGGC 529
BSNT_02304___ 530 CGCATCGA-TGGGATTGGCTGTTATCAGCCTTTTCTTACGGGGCTTTGAA 578
|..| |.| |||.|||||||.||.||.|||.|.||||||||.||.||.||
RBAM_013470__ 530 CTGA-CAAGTGGAATTGGCTTTTGTCCGCCGTCTCTTACGGCGCGTTAAA 578
BSNT_02304___ 579 TTTATCGCTTGCCCAAGCAGTTTTGGTTCCGCTGGCGAATGAAATGTCCT 628
|||||||||.||||||||.||..|.||.|||||.||||||||||||||.|
RBAM_013470__ 579 TTTATCGCTCGCCCAAGCCGTGCTTGTGCCGCTTGCGAATGAAATGTCTT 628
BSNT_02304___ 629 CGGAGAAAGTGATCAAAAAAGGCGCTTTAATCGGAGGCACGATGCTGACG 678
|.|||||.|||||||.||..||.||||...|.||.|||....||.||||.
RBAM_013470__ 629 CAGAGAAGGTGATCAGAAGGGGGGCTTATTTTGGCGGCGTTCTGTTGACA 678
BSNT_02304___ 679 ATTGTGCTGTCCGGGAGTTTTCTGTCTTTGTCAACTCTTCCGGATGTATT 728
.|.|||||..|||.|||.|||.|.||.||.||....||.||||||||..|
RBAM_013470__ 679 CTGGTGCTTGCCGCGAGCTTTTTATCATTATCGGTGCTGCCGGATGTGCT 728
BSNT_02304___ 729 TTTGTATGATATACCGATGGCGCAAGTGGTTTATCTC-TTTGCACGATCT 777
...||.|||.||.||||||||.|||||.||.||| || |.|.|.||.||.
RBAM_013470__ 729 GGAGTTTGACATTCCGATGGCTCAAGTCGTCTAT-TCGTATTCGCGTTCG 777
BSNT_02304___ 778 GTCCATTTGATTTATTTACTCATTATTTTCGGAGAAGTGTTCACATCAGT 827
.|.|||.|.||||||||..|.|||||||||||.||||||||.||.||.||
RBAM_013470__ 778 CTTCATATCATTTATTTGTTTATTATTTTCGGGGAAGTGTTTACGTCGGT 827
BSNT_02304___ 828 TATCGGTAATCTATATGGATTAGAAAAACAAGTGCAAAGCTTTCTTCCAG 877
.|||||.|||.||||.|||||.|||||||||.|..|.||.|||||||...
RBAM_013470__ 828 CATCGGCAATTTATACGGATTGGAAAAACAATTAAACAGTTTTCTTCATA 877
BSNT_02304___ 878 TGAAAAGCAAATATATCTTTGCAGC--CATTATGATCACG---GCTTATA 922
|.|||||.|.||||| |||.|.|| ||||.|| .|| ||||..|
RBAM_013470__ 878 TAAAAAGTACATATA--TTTACGGCGGCATTTTG---GCGTTTGCTTTCA 922
BSNT_02304___ 923 TTACGAGCCAAATAGGGTACGG-CAGGCTTATTTCAACGATTTATCCCTT 971
|||..||||||||.||.||||| || |||.|||||.||..|||||||..|
RBAM_013470__ 923 TTATCAGCCAAATCGGCTACGGACA-GCTGATTTCCACCGTTTATCCGGT 971
BSNT_02304___ 972 GTTTGGCTATGTGAGCCTGGCCTTCATAGGCGCTTTGCTTTGCAAAAAAG 1021
||||||.|||||||||||.||.|||||.|||||.|||.|||||||||||
RBAM_013470__ 972 GTTTGGGTATGTGAGCCTCGCTTTCATCGGCGCATTGATTTGCAAAAAA- 1020
BSNT_02304___ 1022 CTCCTCGGCGGCGCAGTTTATAA------ 1044
.||| ||.| |.||
RBAM_013470__ 1021 ATCC-------CGAA----AGAAAAATAA 1038
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