Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02292 and RBAM_013410

See Amino acid alignment / Visit BSNT_02292 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:59
# Commandline: needle
#    -asequence dna-align/BSNT_02292___spo0E.1.9828.seq
#    -bsequence dna-align/RBAM_013410___spo0E.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02292___spo0E-RBAM_013410___spo0E.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02292___spo0E-RBAM_013410___spo0E.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02292___spo0E
# 2: RBAM_013410___spo0E
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 268
# Identity:     204/268 (76.1%)
# Similarity:   204/268 (76.1%)
# Gaps:          17/268 ( 6.3%)
# Score: 786.0
# 
#
#=======================================

BSNT_02292___      1 ATGGGCGGTTCTTCTGAACAAGAAAGATTGTTGGTGTCTATTGATGAAAA     50
                     ||||||.|||.||||||||||||||.||||.|.||.|||||||||.||||
RBAM_013410__      1 ATGGGCAGTTATTCTGAACAAGAAAAATTGCTTGTATCTATTGATAAAAA     50

BSNT_02292___     51 AAGAAAGTTAATGATAGATGCCGCTAGAAAGCAGGGATTTACAGGGCATG    100
                     ||||||..|.|||||||||||.||||..|.|||.||.||||||||..|||
RBAM_013410__     51 AAGAAAAATGATGATAGATGCGGCTAACAGGCAAGGGTTTACAGGATATG    100

BSNT_02292___    101 ACACGATCAGGCACAGTCAGGAGCTGGATTGTTTAATAAATGAATATCAC    150
                     ||||||||||||||||.|||||.|||||.|||.|.||.||.|..|||||.
RBAM_013410__    101 ACACGATCAGGCACAGCCAGGAACTGGACTGTCTGATGAACGCGTATCAG    150

BSNT_02292___    151 CAGCTTATGCAAGAAAAC---GA------ACATTCCCAAGGGATTCAAGG    191
                     |||||      .|.||||   ||      ||||..||||||.||.||.||
RBAM_013410__    151 CAGCT------GGTAAACCGTGATCGTACACATCACCAAGGAATACAGGG    194

BSNT_02292___    192 CCTTGTAAAGAAATTAGGCTTGTGGCCCCGCAGAGATGTTATGCCAGCAT    241
                     ||||||.||||||.|||||||||...|||||.|.||.||.|||||.||||
RBAM_013410__    195 CCTTGTGAAGAAAATAGGCTTGTTCTCCCGCGGTGACGTCATGCCTGCAT    244

BSNT_02292___    242 ATGATGCAAATAAATAG-    258
                     ||||.|||||.|||| | 
RBAM_013410__    245 ATGAAGCAAACAAAT-GA    261


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