Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02285 and RBAM_013350

See Amino acid alignment / Visit BSNT_02285 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:58
# Commandline: needle
#    -asequence dna-align/BSNT_02285___ykrU.1.9828.seq
#    -bsequence dna-align/RBAM_013350___ykrU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02285___ykrU-RBAM_013350___ykrU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02285___ykrU-RBAM_013350___ykrU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02285___ykrU
# 2: RBAM_013350___ykrU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 808
# Identity:     599/808 (74.1%)
# Similarity:   599/808 (74.1%)
# Gaps:          56/808 ( 6.9%)
# Score: 2184.0
# 
#
#=======================================

BSNT_02285___      1 ATGAAATGGACGATATCTTGTCTTCAATTTGATATTTCATACGGCAAAAC     50
                     |||||||||||..|.||.|||.|.||||||||||||||||||||.||..|
RBAM_013350__      1 ATGAAATGGACCGTTTCCTGTTTGCAATTTGATATTTCATACGGAAATCC     50

BSNT_02285___     51 TTCGGAAAATATAAAAAAAGCTGAATTTTTCATCGAAAAAGAAAGCAAAC    100
                     |||.|||||..|.||||||||.||||.|||.||.||..||||||||...|
RBAM_013350__     51 TTCAGAAAACTTTAAAAAAGCAGAATCTTTGATTGAGCAAGAAAGCCGCC    100

BSNT_02285___    101 ATGCTGATGTTCTTGTTCTGCCTGAATTATGGACGACCGGATATGATCT-    149
                     ||||.|||||..|.||.||.|||||.||.|||||||||||.|||||||| 
RBAM_013350__    101 ATGCGGATGTAATCGTGCTTCCTGAGTTGTGGACGACCGGCTATGATCTC    150

BSNT_02285___    150 ----GGCCAATCTTGATGAACTCGCTGATAAAGACGGC--CGCTCCGCTC    193
                         ||     ||.||..|.||.||.|||.||.|||||  .|.|    ||
RBAM_013350__    151 ACACGG-----CTAGACCAGCTGGCGGATGAAAACGGCAAAGTT----TC    191

BSNT_02285___    194 AGAGC--TGGCTGAAGAAAACGGCAAAAA-----AACATGGTGTTCATAT    236
                     |||.|  |||||.||..||||||||||||     |||     ||.||..|
RBAM_013350__    192 AGAACAATGGCTTAAAGAAACGGCAAAAACATACAAC-----GTACACCT    236

BSNT_02285___    237 TGTCGCCGGATCGGTCGCTGTCAGGAAGAATTCTG---ATGTTTATAATA    283
                     .||.||||||||..|.||.||||  |||||..| |   ||||.|||||.|
RBAM_013350__    237 CGTTGCCGGATCTTTTGCGGTCA--AAGAAGGC-GAAAATGTCTATAACA    283

BSNT_02285___    284 CAATGTACATCGCGGATAA----GGAAGGGCAAATCATTAAAGAGTA-CA    328
                     |.|||||||||||.|||||    |||    ||.|||.|.||...||| ||
RBAM_013350__    284 CCATGTACATCGCCGATAACAGCGGA----CAGATCGTGAAGCGGTATCA    329

BSNT_02285___    329 GAAAAGCCCATCTTTTTCAGCTGATGGATGAGCATCTGTATTTATCAGCC    378
                     | |||||||||||.|||||||||||||||||.||.||.||.||.|||||.
RBAM_013350__    330 G-AAAGCCCATCTGTTTCAGCTGATGGATGAACACCTTTACTTGTCAGCA    378

BSNT_02285___    379 GGTTCCGAA-----GACGGATACTTTGAGCTTGACGGCGTCAAAAGCTCA    423
                     |     |||     |||||.|.|||||||||||||||.|||||..||.|.
RBAM_013350__    379 G-----GAAACAGCGACGGTTCCTTTGAGCTTGACGGTGTCAAGTGCGCC    423

BSNT_02285___    424 GGATTGATCTGTTACGATATCCGTTTTCCGGAATGGATCAGAAAACATAC    473
                     ||..|||||||.||.|||||||||||.||.||||||||||||||.|||||
RBAM_013350__    424 GGGCTGATCTGCTATGATATCCGTTTCCCCGAATGGATCAGAAAGCATAC    473

BSNT_02285___    474 GACAAAAGGCGCCAACGTGCTGTTTATTTCTGCGGAATGGCCTCTTCCCC    523
                     |.|..|.|||||.||.||.||||||||.|||||||||||||||||.||||
RBAM_013350__    474 GTCCCAGGGCGCGAATGTCCTGTTTATCTCTGCGGAATGGCCTCTGCCCC    523

BSNT_02285___    524 GCCTTGATCATTGGAAAAGCCTGCTTATTGCGCGGGCCATTGAAAACCAA    573
                     ||||||||||||||..||||||||||||.||..|.||.||||||||||||
RBAM_013350__    524 GCCTTGATCATTGGCGAAGCCTGCTTATCGCCAGAGCAATTGAAAACCAA    573

BSNT_02285___    574 TGCTTTGTCGCAGCCTGCAATTGTACCGGTTCAAATCCGGATAATGAATT    623
                     ||.|||||||||||||..||.||.||.||.||.|||||.|||||||||||
RBAM_013350__    574 TGTTTTGTCGCAGCCTCTAACTGCACGGGGTCCAATCCCGATAATGAATT    623

BSNT_02285___    624 TGCAGGACATAGCCTGATTATTGATCCATGGGGACGTGTACTTGCTGAAG    673
                     |||.||.||.||||||||||||||.||.|||||.||..|..|.||.|||.
RBAM_013350__    624 TGCCGGCCACAGCCTGATTATTGACCCGTGGGGCCGGATTTTAGCCGAAA    673

BSNT_02285___    674 GCGGCCGGGAAGAAGGCATAGTCCGAGCGGAAATCGACCT-TCAAGAAAG    722
                     |.|.||||...||||||..||||||.|||||||||||..| || ||||||
RBAM_013350__    674 GAGACCGGACGGAAGGCGCAGTCCGGGCGGAAATCGATGTGTC-AGAAAG    722

BSNT_02285___    723 CGCAGAAGTTCGGGAGAGCATTCCTGTTTTCAATGATATCAGAAAAGATT    772
                     |||.|..||.||||..|.||||||.||||||.|.||..|..|....||||
RBAM_013350__    723 CGCGGCCGTGCGGGGAACCATTCCGGTTTTCCAAGACTTGCGGCGTGATT    772

BSNT_02285___    773 TATATTAA    780
                     ||||||||
RBAM_013350__    773 TATATTAA    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02285 and RBAM_013350

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
