Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02276 and RBAM_013300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_02276___ykrP.1.9828.seq
# -bsequence dna-align/RBAM_013300___ykrP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02276___ykrP-RBAM_013300___ykrP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02276___ykrP-RBAM_013300___ykrP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02276___ykrP
# 2: RBAM_013300___ykrP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity: 780/1039 (75.1%)
# Similarity: 780/1039 (75.1%)
# Gaps: 32/1039 ( 3.1%)
# Score: 2805.0
#
#
#=======================================
BSNT_02276___ 1 ATGAGTAAATCGCGGGACAGTTATTTCGATAACGCAAAATTTTTATTGAT 50
||||..||||||||.||||||||.||.||.|||||.||.|||.|.|||||
RBAM_013300__ 1 ATGACAAAATCGCGAGACAGTTACTTTGACAACGCCAAGTTTATCTTGAT 50
BSNT_02276___ 51 ATTCCTTGTTGTATTCGGTCATATCCTTCGTTCCTTTATTAATGATAATC 100
.||.||.||.||.|||||.||||||||.||.||.||||||||.|..|||.
RBAM_013300__ 51 TTTTCTGGTGGTGTTCGGCCATATCCTCCGGTCATTTATTAACGGAAATG 100
BSNT_02276___ 101 ATTTTATGCTCTACCTCTACAAGTTCATTTACACATTCCATATGCCTGCA 150
|.|||||||||.|.||||||||.||||||||.||.||.||||||||.||.
RBAM_013300__ 101 AGTTTATGCTCCATCTCTACAAATTCATTTATACTTTTCATATGCCGGCC 150
BSNT_02276___ 151 TTTATTCTTGTATCCGGTTATTTCGCGAAAGGCTTTAAACGGGCGGGATA 200
|||||.||.||.|||||.||||||||.|||..||||||.|||...||.||
RBAM_013300__ 151 TTTATCCTGGTTTCCGGCTATTTCGCAAAAAACTTTAAGCGGAAAGGTTA 200
BSNT_02276___ 201 TGTAAAAAAGCTGGCGGTCAAGCTGATTATTCCGTATTTGATTTTCCAAA 250
|||.||.||||||||.||.|||||||||||||||||.||||||||.||..
RBAM_013300__ 201 TGTGAAGAAGCTGGCTGTGAAGCTGATTATTCCGTACTTGATTTTTCAGG 250
BSNT_02276___ 251 TCATTTATTCCGTCTTTTATTACATTATGCAAGATGAAAGCATGGCAAAT 300
.||||||.||.||.|||||.||..|.||.||.||||||||||||||||..
RBAM_013300__ 251 GCATTTACTCAGTTTTTTACTATTTGATTCAGGATGAAAGCATGGCAAGC 300
BSNT_02276___ 301 GTGAACCCGATTGATCCGCAATGGTCGTTATGGTTTCTTGTAAGCTTATT 350
||.||.||||||||||||||.|||||..|.||||||.|.||.||||||||
RBAM_013300__ 301 GTCAATCCGATTGATCCGCAGTGGTCTCTCTGGTTTTTAGTCAGCTTATT 350
BSNT_02276___ 351 CTTTTGGAACCTGCTCCTATATCCTTTTTCAAAAGTTTCAAAGCAGTGGG 400
|||||||||.|||||.||.||.||.|||.|.||..|..|.||...|||||
RBAM_013300__ 351 CTTTTGGAATCTGCTGCTTTACCCCTTTACGAAGCTGCCGAAAATGTGGG 400
BSNT_02276___ 401 CGCTGTTTGTC-AGCTGCGGAATCGCCGTGCTGATCGGTTATCTGGACTT 449
|||| |..|.| ||||||||..|.|||||..|||||||.|||||.||.||
RBAM_013300__ 401 CGCT-TGGGGCGAGCTGCGGGCTTGCCGTCATGATCGGGTATCTTGATTT 449
BSNT_02276___ 450 TGTCAGCAGCACGCTGAG-CTTGTCACGGACATTCGTATTCTTACCGATG 498
|.|||||||||||||||| ||| ||||||||.||.||.||..||||||||
RBAM_013300__ 450 TATCAGCAGCACGCTGAGTCTT-TCACGGACGTTTGTTTTTCTACCGATG 498
BSNT_02276___ 499 TTCCTTGTCGGTTTTTATTTAAATAAACATCATTTTGATTTATTGAGATC 548
||.||.|||||.|||||||||||.|||||.||.||||||||..| ||
RBAM_013300__ 499 TTTCTCGTCGGGTTTTATTTAAAGAAACAGCACTTTGATTTGCT----TC 544
BSNT_02276___ 549 G----AAACGCGGCAAACAAATTG-CGCTCGGAGTGCTTGCCGCA--GTA 591
| |||.|.||||..||.|||| ||| .||.||.||.| |.| ||.
RBAM_013300__ 545 GGGCTAAAAGAGGCAGGCAGATTGCCGC-GGGCGTACTGG--GGATTGTT 591
BSNT_02276___ 592 TTCGTCATCTGCTGGGGCATCGATTTTGACTATTCTTTTCTGTTTGGTTC 641
|||.||.|.||||||.|.||.||||||||.||.||.|..|||||.||.||
RBAM_013300__ 592 TTCCTCTTATGCTGGTGTATTGATTTTGATTACTCGTGGCTGTTCGGATC 641
BSNT_02276___ 642 AAAACCGTATTCTTCATTTGGAGAC-GTTACCCTGGTAAGCGGACTATCC 690
..|.||.||||||.||||.|| .|| ||..|.|||.|.|||||.||.||.
RBAM_013300__ 642 GGAGCCTTATTCTACATTCGG-CACTGTGTCGCTGTTGAGCGGTCTGTCG 690
BSNT_02276___ 691 CGAATCGGCTGGTATGTACTCGCCTTTGGGGCAACCTTCAGCTTTTTAGC 740
||.|||.||||||||||..|.|||||||..||.||.|||||||||||.||
RBAM_013300__ 691 CGCATCTGCTGGTATGTTTTGGCCTTTGCCGCCACTTTCAGCTTTTTGGC 740
BSNT_02276___ 741 GCTTGTTCCGCAAAAACGGTATTTCTTTACCAAATGGGGAACCCGGACAT 790
|||.|||||||||||.||.|||||||||||.||||||||.||..|.||.|
RBAM_013300__ 741 GCTCGTTCCGCAAAAGCGTTATTTCTTTACGAAATGGGGTACGAGAACGT 790
BSNT_02276___ 791 TTTACGTGTATCTGCTTCACGGGTTTATTATTAAGACATTACGACAGGTC 840
||||||||||||||||.||.||.||.|||||.||.||..|.||.|||.||
RBAM_013300__ 791 TTTACGTGTATCTGCTGCATGGATTCATTATAAAAACGCTGCGGCAGATC 840
BSNT_02276___ 841 GGGCTTGAGGATTGGCTT-ACTGACTATCAAAGCTTAGTGATCCTCTTGC 889
||||||||.|| |..||| .||||.|||||.|..|||||.||.|||||..
RBAM_013300__ 841 GGGCTTGAAGA-TCACTTGTCTGATTATCAGAATTTAGTCATGCTCTTAA 889
BSNT_02276___ 890 TTTTAACAGCAGCCCTGACATCAGTCCTCTCCAGCAACTTTGTTAAGACA 939
|||||||.||.||.||.||.||..|.|||||||||||....||.||.||.
RBAM_013300__ 890 TTTTAACGGCCGCTCTTACGTCCATTCTCTCCAGCAATGCGGTGAAAACG 939
BSNT_02276___ 940 GTCGCTCAGCCCTTCATTGAGCTGAGGATGACCAGCT-TATTGCAATTTG 988
|.|||.|||||.||.|||||||||.||||.|||.||| ..||| ||...|
RBAM_013300__ 940 GCCGCACAGCCGTTTATTGAGCTGCGGATCACCGGCTGGCTTG-AAGCGG 988
BSNT_02276___ 989 TCAGAGGAACGGGCAAAAA----TGCTTATTTAAAATAG 1023
|.|.||||| |||.|| ||||||||..|||||.
RBAM_013300__ 989 TAAAAGGAA----CAAGAAACGGTGCTTATTCGAAATAA 1023
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