Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02276 and RBAM_013300

See Amino acid alignment / Visit BSNT_02276 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence dna-align/BSNT_02276___ykrP.1.9828.seq
#    -bsequence dna-align/RBAM_013300___ykrP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02276___ykrP-RBAM_013300___ykrP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02276___ykrP-RBAM_013300___ykrP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02276___ykrP
# 2: RBAM_013300___ykrP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity:     780/1039 (75.1%)
# Similarity:   780/1039 (75.1%)
# Gaps:          32/1039 ( 3.1%)
# Score: 2805.0
# 
#
#=======================================

BSNT_02276___      1 ATGAGTAAATCGCGGGACAGTTATTTCGATAACGCAAAATTTTTATTGAT     50
                     ||||..||||||||.||||||||.||.||.|||||.||.|||.|.|||||
RBAM_013300__      1 ATGACAAAATCGCGAGACAGTTACTTTGACAACGCCAAGTTTATCTTGAT     50

BSNT_02276___     51 ATTCCTTGTTGTATTCGGTCATATCCTTCGTTCCTTTATTAATGATAATC    100
                     .||.||.||.||.|||||.||||||||.||.||.||||||||.|..|||.
RBAM_013300__     51 TTTTCTGGTGGTGTTCGGCCATATCCTCCGGTCATTTATTAACGGAAATG    100

BSNT_02276___    101 ATTTTATGCTCTACCTCTACAAGTTCATTTACACATTCCATATGCCTGCA    150
                     |.|||||||||.|.||||||||.||||||||.||.||.||||||||.||.
RBAM_013300__    101 AGTTTATGCTCCATCTCTACAAATTCATTTATACTTTTCATATGCCGGCC    150

BSNT_02276___    151 TTTATTCTTGTATCCGGTTATTTCGCGAAAGGCTTTAAACGGGCGGGATA    200
                     |||||.||.||.|||||.||||||||.|||..||||||.|||...||.||
RBAM_013300__    151 TTTATCCTGGTTTCCGGCTATTTCGCAAAAAACTTTAAGCGGAAAGGTTA    200

BSNT_02276___    201 TGTAAAAAAGCTGGCGGTCAAGCTGATTATTCCGTATTTGATTTTCCAAA    250
                     |||.||.||||||||.||.|||||||||||||||||.||||||||.||..
RBAM_013300__    201 TGTGAAGAAGCTGGCTGTGAAGCTGATTATTCCGTACTTGATTTTTCAGG    250

BSNT_02276___    251 TCATTTATTCCGTCTTTTATTACATTATGCAAGATGAAAGCATGGCAAAT    300
                     .||||||.||.||.|||||.||..|.||.||.||||||||||||||||..
RBAM_013300__    251 GCATTTACTCAGTTTTTTACTATTTGATTCAGGATGAAAGCATGGCAAGC    300

BSNT_02276___    301 GTGAACCCGATTGATCCGCAATGGTCGTTATGGTTTCTTGTAAGCTTATT    350
                     ||.||.||||||||||||||.|||||..|.||||||.|.||.||||||||
RBAM_013300__    301 GTCAATCCGATTGATCCGCAGTGGTCTCTCTGGTTTTTAGTCAGCTTATT    350

BSNT_02276___    351 CTTTTGGAACCTGCTCCTATATCCTTTTTCAAAAGTTTCAAAGCAGTGGG    400
                     |||||||||.|||||.||.||.||.|||.|.||..|..|.||...|||||
RBAM_013300__    351 CTTTTGGAATCTGCTGCTTTACCCCTTTACGAAGCTGCCGAAAATGTGGG    400

BSNT_02276___    401 CGCTGTTTGTC-AGCTGCGGAATCGCCGTGCTGATCGGTTATCTGGACTT    449
                     |||| |..|.| ||||||||..|.|||||..|||||||.|||||.||.||
RBAM_013300__    401 CGCT-TGGGGCGAGCTGCGGGCTTGCCGTCATGATCGGGTATCTTGATTT    449

BSNT_02276___    450 TGTCAGCAGCACGCTGAG-CTTGTCACGGACATTCGTATTCTTACCGATG    498
                     |.|||||||||||||||| ||| ||||||||.||.||.||..||||||||
RBAM_013300__    450 TATCAGCAGCACGCTGAGTCTT-TCACGGACGTTTGTTTTTCTACCGATG    498

BSNT_02276___    499 TTCCTTGTCGGTTTTTATTTAAATAAACATCATTTTGATTTATTGAGATC    548
                     ||.||.|||||.|||||||||||.|||||.||.||||||||..|    ||
RBAM_013300__    499 TTTCTCGTCGGGTTTTATTTAAAGAAACAGCACTTTGATTTGCT----TC    544

BSNT_02276___    549 G----AAACGCGGCAAACAAATTG-CGCTCGGAGTGCTTGCCGCA--GTA    591
                     |    |||.|.||||..||.|||| ||| .||.||.||.|  |.|  ||.
RBAM_013300__    545 GGGCTAAAAGAGGCAGGCAGATTGCCGC-GGGCGTACTGG--GGATTGTT    591

BSNT_02276___    592 TTCGTCATCTGCTGGGGCATCGATTTTGACTATTCTTTTCTGTTTGGTTC    641
                     |||.||.|.||||||.|.||.||||||||.||.||.|..|||||.||.||
RBAM_013300__    592 TTCCTCTTATGCTGGTGTATTGATTTTGATTACTCGTGGCTGTTCGGATC    641

BSNT_02276___    642 AAAACCGTATTCTTCATTTGGAGAC-GTTACCCTGGTAAGCGGACTATCC    690
                     ..|.||.||||||.||||.|| .|| ||..|.|||.|.|||||.||.||.
RBAM_013300__    642 GGAGCCTTATTCTACATTCGG-CACTGTGTCGCTGTTGAGCGGTCTGTCG    690

BSNT_02276___    691 CGAATCGGCTGGTATGTACTCGCCTTTGGGGCAACCTTCAGCTTTTTAGC    740
                     ||.|||.||||||||||..|.|||||||..||.||.|||||||||||.||
RBAM_013300__    691 CGCATCTGCTGGTATGTTTTGGCCTTTGCCGCCACTTTCAGCTTTTTGGC    740

BSNT_02276___    741 GCTTGTTCCGCAAAAACGGTATTTCTTTACCAAATGGGGAACCCGGACAT    790
                     |||.|||||||||||.||.|||||||||||.||||||||.||..|.||.|
RBAM_013300__    741 GCTCGTTCCGCAAAAGCGTTATTTCTTTACGAAATGGGGTACGAGAACGT    790

BSNT_02276___    791 TTTACGTGTATCTGCTTCACGGGTTTATTATTAAGACATTACGACAGGTC    840
                     ||||||||||||||||.||.||.||.|||||.||.||..|.||.|||.||
RBAM_013300__    791 TTTACGTGTATCTGCTGCATGGATTCATTATAAAAACGCTGCGGCAGATC    840

BSNT_02276___    841 GGGCTTGAGGATTGGCTT-ACTGACTATCAAAGCTTAGTGATCCTCTTGC    889
                     ||||||||.|| |..||| .||||.|||||.|..|||||.||.|||||..
RBAM_013300__    841 GGGCTTGAAGA-TCACTTGTCTGATTATCAGAATTTAGTCATGCTCTTAA    889

BSNT_02276___    890 TTTTAACAGCAGCCCTGACATCAGTCCTCTCCAGCAACTTTGTTAAGACA    939
                     |||||||.||.||.||.||.||..|.|||||||||||....||.||.||.
RBAM_013300__    890 TTTTAACGGCCGCTCTTACGTCCATTCTCTCCAGCAATGCGGTGAAAACG    939

BSNT_02276___    940 GTCGCTCAGCCCTTCATTGAGCTGAGGATGACCAGCT-TATTGCAATTTG    988
                     |.|||.|||||.||.|||||||||.||||.|||.||| ..||| ||...|
RBAM_013300__    940 GCCGCACAGCCGTTTATTGAGCTGCGGATCACCGGCTGGCTTG-AAGCGG    988

BSNT_02276___    989 TCAGAGGAACGGGCAAAAA----TGCTTATTTAAAATAG   1023
                     |.|.|||||    |||.||    ||||||||..|||||.
RBAM_013300__    989 TAAAAGGAA----CAAGAAACGGTGCTTATTCGAAATAA   1023


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.