Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02270 and RBAM_013270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_02270___ykrM.1.9828.seq
# -bsequence dna-align/RBAM_013270___ykrM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02270___ykrM-RBAM_013270___ykrM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02270___ykrM-RBAM_013270___ykrM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02270___ykrM
# 2: RBAM_013270___ykrM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1368
# Identity: 1054/1368 (77.0%)
# Similarity: 1054/1368 (77.0%)
# Gaps: 33/1368 ( 2.4%)
# Score: 3997.0
#
#
#=======================================
BSNT_02270___ 1 ATGAGATTAAAGTTTGGA--AAATTGATACAGGCCTTGTCACCGGCCCAG 48
||||.||||||..| || |||||.||||||..||||||.||.||.|||
RBAM_013270__ 1 ATGAAATTAAAACT--GAAGAAATTCATACAGATCTTGTCGCCTGCACAG 48
BSNT_02270___ 49 CTGATCGCATTATATTATTTTCTTGCAGTTACTGTGGCCGTTATATTGCT 98
|||||.||||||||||||||||||||.||.||.|||||..||||.|||||
RBAM_013270__ 49 CTGATTGCATTATATTATTTTCTTGCTGTGACGGTGGCATTTATTTTGCT 98
BSNT_02270___ 99 GAGTTTGCCGGCGGCCCATAAACCGGGGGCGGATTGGACGTTTATTGATG 148
.|||.|||||||.|||||.||||..|||||....|||.|||||||.||.|
RBAM_013270__ 99 AAGTCTGCCGGCCGCCCACAAACAAGGGGCCAGCTGGTCGTTTATAGACG 148
BSNT_02270___ 149 CGCTTTTTACAGCTGTCAGTTCAGTCAGCGTAACGGGGCTGACGGTAGTT 198
||||.|||||.||||||||.||||||||.||.||.||..|.|||||.||.
RBAM_013270__ 149 CGCTGTTTACGGCTGTCAGCTCAGTCAGTGTCACCGGTTTAACGGTCGTC 198
BSNT_02270___ 199 GATACAGCTGATACATTCAGCACAATAGGGATTTTTATATTAGCATTTGT 248
.|.||.|||||||||||||||||....||||||.|.||.||.||.||.||
RBAM_013270__ 199 AACACGGCTGATACATTCAGCACGGCCGGGATTGTCATTTTGGCTTTCGT 248
BSNT_02270___ 249 TCTGCAATTTGGCGGAATCGGAATTATGACGCTCGGAACGTTCATTTGGC 298
.||.|||||.|||||||||||.||.||||||||||||||.|||.|.||||
RBAM_013270__ 249 GCTTCAATTCGGCGGAATCGGCATCATGACGCTCGGAACATTCGTCTGGC 298
BSNT_02270___ 299 TGATCATGGGAAAACGAATCGGGCTGAAAGAACGGAAGCTGATTATGGTT 348
|.||.|||||.|||||.|||||.|||...|||||||||||.||.|||||.
RBAM_013270__ 299 TCATTATGGGCAAACGGATCGGTCTGCGGGAACGGAAGCTCATCATGGTG 348
BSNT_02270___ 349 GATCAAAACCAATCCCAGTTTTCAGGAATTGTCAATCTGATGAAGCAGGT 398
|||||.||.|||||.||||||||.||.||.|||||.|||||||||||.||
RBAM_013270__ 349 GATCAGAATCAATCGCAGTTTTCCGGTATCGTCAACCTGATGAAGCAAGT 398
BSNT_02270___ 399 ACTGTTTCTGATCTTGTGGATTGAATTTTTTGGCGGGCTGATTCTCGGCA 448
.||||||.||||.||.|..||.||.|||||.|||||..|.||..|.||.|
RBAM_013270__ 399 GCTGTTTTTGATTTTATTAATCGAGTTTTTAGGCGGCATCATCTTAGGAA 448
BSNT_02270___ 449 CATATTTCTTAACCTACTATGACTCCTATCAGGAAGCTTATTTACACGGA 498
|||||||.|||||.||.|||||.||.|.|.|..|.||.||.||.||||||
RBAM_013270__ 449 CATATTTTTTAACGTATTATGATTCGTTTGAACAGGCGTACTTGCACGGA 498
BSNT_02270___ 499 TTTTTTGCCAGTATCAGTGCAACGACAAACGGCGGATTTGATATTACCGG 548
||.|||||.||..||||.||.||||||||||||||.|||||||||||.||
RBAM_013270__ 499 TTCTTTGCGAGCGTCAGCGCCACGACAAACGGCGGTTTTGATATTACGGG 548
BSNT_02270___ 549 TAATTCGATGATTCCATTTCGCCACGATTACTTTGTGCAGTTTATTACAA 598
.|||||..|..|.||.||..|.||.||.||.||.||||||||||||||.|
RBAM_013270__ 549 AAATTCACTCGTCCCGTTCAGACATGACTATTTCGTGCAGTTTATTACGA 598
BSNT_02270___ 599 TGCTTTTAATTATATTTGGAGCGATTGGATTTCCCGTGCTTGTTGAAGTA 648
|||||.|.|||||.||.||.|||||.||.|||||.|||||.||.||||||
RBAM_013270__ 599 TGCTTCTGATTATTTTCGGTGCGATCGGTTTTCCGGTGCTCGTAGAAGTA 648
BSNT_02270___ 649 AAGGATTTCCTGTTTTCAAAGCATCGGCGTTATCCATTTACGCTTTTTAC 698
|||||.||..||||||||||.||.||..|.||..||||.|||||.|||||
RBAM_013270__ 649 AAGGACTTTTTGTTTTCAAAACAGCGCAGATACTCATTCACGCTGTTTAC 698
BSNT_02270___ 699 AAAGATCACGACGATTACGTTCG----GCTCACTTGTCTTGTTTGGAGCC 744
.||.||.|||||..||||||||| |||| ||.|||||.||||||
RBAM_013270__ 699 GAAAATTACGACCGTTACGTTCGGAATGCTC----GTTTTGTTCGGAGCC 744
BSNT_02270___ 745 ATTGGCATCTTTGCCCTGGAAGCAAACCATGCGTTC-----GCGGGAAAA 789
.|.|||||.|..||.||.|||||||.||||| || | |||||||
RBAM_013270__ 745 GTGGGCATTTACGCGCTTGAAGCAAGCCATG---TCATGAAG-GGGAAAA 790
BSNT_02270___ 790 TCATGGCATGATATTTTGTTTTTGTCCCTGTTTCAATCAACGGCAACCCG 839
.| |||||||||.||||.|||||.|..||.|||||||||||.||.||.||
RBAM_013270__ 791 GC-TGGCATGATGTTTTATTTTTATGTCTCTTTCAATCAACCGCTACGCG 839
BSNT_02270___ 840 AAGCGGGGGACTGGCAACAATCGATATCAGCCAATTATCAGATTCCACAC 889
||||||.||.||.||.|||||.|||||||||||..|.||.|...|.|||.
RBAM_013270__ 840 AAGCGGCGGGCTTGCGACAATTGATATCAGCCAGCTGTCGGCGCCGACAT 889
BSNT_02270___ 890 TCTTTTTTATTTGTGCGCTGATGTTTATCGGAGCGTCGCCAAGCTCAGTC 939
|.|||||.|||||.||.||.|||||.|||||.||.||.||.|||||.|||
RBAM_013270__ 890 TATTTTTCATTTGCGCCCTCATGTTCATCGGCGCATCACCGAGCTCGGTC 939
BSNT_02270___ 940 GGGGGAGGCATACGGACAACGACTTTTGCTTTGAACCTTCTTGCGCTGTT 989
||.||.||.||.||.||.|||||.|||||..|.|||||.|||||.|||||
RBAM_013270__ 940 GGCGGCGGAATCCGTACGACGACGTTTGCGCTTAACCTGCTTGCCCTGTT 989
BSNT_02270___ 990 TCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTC 1039
||||||||||||.||.|||||.||.||.|||||.||.|||||.|||||||
RBAM_013270__ 990 TCATTTTGCCCGGGGGAATAAAGCGGTCAAGGTCTTTAAACGCGAGCTTC 1039
BSNT_02270___ 1040 ACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGATGGCGATCCTG 1089
|||..|||||..|.|||||||||||.||.||.||||||||||||||.|||
RBAM_013270__ 1040 ACCAGGCTGATGTCATGAAGTCGCTGGTCGTTACGATGATGGCGATTCTG 1089
BSNT_02270___ 1090 CTCGTTTTTGGCGCGACACTCATTCTGACCATTAC--AGAAAAA-CATTC 1136
|||||.||.||..||||.||.||||||.||.|.|| ||||||| ||..|
RBAM_013270__ 1090 CTCGTGTTCGGATCGACGCTGATTCTGTCCGTGACCGAGAAAAATCAGAC 1139
BSNT_02270___ 1137 CCTGCT-GGA--GCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCG 1183
.||.|| ||| |||| |||||||||||.||.||||||||.||.||||
RBAM_013270__ 1140 GCTCCTCGGACTGCTT---TTTGAAGTGTGTTCCGCATTCGGAACGACCG 1186
BSNT_02270___ 1184 GCCTGTCGCTTGGAATTACGGCAGATTTGAGCAGTGTTGGAAAATGCGTC 1233
|||||||||||||.|||||..|..||||.|||....|.||||||||.|||
RBAM_013270__ 1187 GCCTGTCGCTTGGGATTACTCCGCATTTAAGCGACATCGGAAAATGTGTC 1236
BSNT_02270___ 1234 ATTATGATTGTCATGTTTATCGGGCGAATCGGCATCCTGACCTTCCTGTA 1283
||.||||||||||||||||||||.||.||||||||..||||.|||||.||
RBAM_013270__ 1237 ATCATGATTGTCATGTTTATCGGCCGGATCGGCATTTTGACGTTCCTTTA 1286
BSNT_02270___ 1284 TCTGATCGGAAGAAAGGAAATTGAAGCGAACTATCACTATCCGAAAGAAA 1333
|.|||||||..||||.|||||.|||||.||.|||||.||||||||.||||
RBAM_013270__ 1287 TTTGATCGGCCGAAAAGAAATCGAAGCAAATTATCATTATCCGAAGGAAA 1336
BSNT_02270___ 1334 GAGTGATTATCGGATAG- 1350
||.|||||||.||.| |
RBAM_013270__ 1337 GAATGATTATTGGCT-GA 1353
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