Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02268 and RBAM_013250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_02268___ykrK.1.9828.seq
# -bsequence dna-align/RBAM_013250___ykrK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02268___ykrK-RBAM_013250___ykrK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02268___ykrK-RBAM_013250___ykrK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02268___ykrK
# 2: RBAM_013250___ykrK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 731
# Identity: 534/731 (73.1%)
# Similarity: 534/731 (73.1%)
# Gaps: 58/731 ( 7.9%)
# Score: 1857.0
#
#
#=======================================
BSNT_02268___ 1 ATGAACATTTTTAAACTCTCTCGAACCGATATGGTGCGGCTGCTCTATTC 50
|||||||..||||||||..|.|||||.||||||||.|||||.||.||..|
RBAM_013250__ 1 ATGAACACGTTTAAACTGACCCGAACTGATATGGTCCGGCTTCTTTACGC 50
BSNT_02268___ 51 CCTAAAAGGACAAGGAGA-ACATAGCCCGCTCGACATTCTCGTCCAATCA 99
..|||||||.|||||||| .|| |.|||.|||.|.||..|..|.||||||
RBAM_013250__ 51 GTTAAAAGGCCAAGGAGACGCA-ACCCCTCTCCAAATCTTATTGCAATCA 99
BSNT_02268___ 100 GCGAACATGTC---------AGCAGAAAAAGCAGCCAATCATCTAGAAAT 140
|||.|.|||.| .||.||| ||| |.|||..|.||
RBAM_013250__ 100 GCGGATATGACCTTGGATGAGGCGGAA-----AGC----CGTCTGCATAT 140
BSNT_02268___ 141 TCCTGAATTTCTTACAAGATATGAACGAAAAAAACAGAAAAAAGAATACG 190
.|||||||||||.||.||||..||||||||||||.|||||||.|||||||
RBAM_013250__ 141 CCCTGAATTTCTGACGAGATTCGAACGAAAAAAAGAGAAAAAGGAATACG 190
BSNT_02268___ 191 GACTGTCTACAAATGAAATCGTAGAGCTTGGCAACTTATGCGAGCTGACT 240
|.||.||.||.||.||.||.||.|||||.||.||..|.|||||||||||.
RBAM_013250__ 191 GGCTTTCAACTAACGAGATTGTCGAGCTGGGAAATCTGTGCGAGCTGACG 240
BSNT_02268___ 241 TCGTTAAAGTCAACCGCGATTCAAAACTGGGTAAAGCGTGATATCAAAGA 290
||.|||||.||||||||..|.|||||||||||.|||||.|||||.|||||
RBAM_013250__ 241 TCTTTAAAATCAACCGCCGTCCAAAACTGGGTGAAGCGCGATATTAAAGA 290
BSNT_02268___ 291 TCTGATCGGACA-CCCTGAGCTAGGCAAAAAATACTCAATTGAACAGGCA 339
|.|.|||||.|| ||||.| ||.|||||||||||..||||||||||.||.
RBAM_013250__ 291 TTTAATCGGCCACCCCTTA-CTCGGCAAAAAATATACAATTGAACAAGCT 339
BSNT_02268___ 340 GTTATTCTTTTAATTGTACGTGATTTAAAATCCATTTATGACTTTGAACA 389
||.||.|||.|.||||||||||||||||||||.|||||||||||.|||||
RBAM_013250__ 340 GTCATCCTTCTCATTGTACGTGATTTAAAATCAATTTATGACTTCGAACA 389
BSNT_02268___ 390 CATACG-GGCTATTTTAAAAGTGGCCTTTAACACAATCTCAGACAGATCT 438
.||||| ||| ||.||||||.|.||.||||||||.|||.||||||||||.
RBAM_013250__ 390 TATACGCGGC-ATATTAAAAATCGCTTTTAACACGATCACAGACAGATCA 438
BSNT_02268___ 439 GATGATGTCATCAGCCCGAT-TGCTTATTATGAAAGCTGCGCATATGTGC 487
||.||.|||||||||||||| .|| ||.||||||||||||||..|.|||.
RBAM_013250__ 439 GACGACGTCATCAGCCCGATCAGC-TACTATGAAAGCTGCGCCCAAGTGA 487
BSNT_02268___ 488 TTGATGCCATC--CATCACCAAG--ATACTCCTTCCATGAAAGAATCAAA 533
||||| .||| ||||| .||| |.|| ||..|.|||||.|||.|.|.
RBAM_013250__ 488 TTGAT--TATCTTCATCA-TAAGGCAAAC-CCGCCGATGAAGGAAACGAG 533
BSNT_02268___ 534 TCTGCAGGAGATCGCCGAACAGGAGACAG---AGCGTCTCCGTCA----C 576
.|||||||||.|||.||||.||.||||.| ||| ||| |
RBAM_013250__ 534 CCTGCAGGAGCTCGTCGAAGAGCAGACGGACAAGC-------TCAAAGGC 576
BSNT_02268___ 577 CGTTTTGAAGAACT--GAATGACAGCCAATGGCTTAAAATCAGACAGATT 624
.|.|||.||||||| ||| .|.|.||||||...||.||||||...||.
RBAM_013250__ 577 TGCTTTAAAGAACTCGGAA--GCGGACAATGGAACAATATCAGATCCATA 624
BSNT_02268___ 625 ATCGCTATTACAGTCCTCTCCATTTTGACATTCCATATTCAGGCAACCGC 674
|||||..|.||.||.||||||.|||||||.|||||||||||.||..|.||
RBAM_013250__ 625 ATCGCCGTCACGGTGCTCTCCGTTTTGACTTTCCATATTCAAGCCTCAGC 674
BSNT_02268___ 675 ACATAAAATGA-CAGCAGACATT--CTATAG 702
..|.||||||| |||| |||| .||||.
RBAM_013250__ 675 CTACAAAATGATCAGC---CATTTATTATAA 702
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