Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02265 and RBAM_013230

See Amino acid alignment / Visit BSNT_02265 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence dna-align/BSNT_02265___ykrI.1.9828.seq
#    -bsequence dna-align/RBAM_013230___ykrI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02265___ykrI-RBAM_013230___ykrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02265___ykrI-RBAM_013230___ykrI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02265___ykrI
# 2: RBAM_013230___ykrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1225
# Identity:     860/1225 (70.2%)
# Similarity:   860/1225 (70.2%)
# Gaps:         134/1225 (10.9%)
# Score: 2919.5
# 
#
#=======================================

BSNT_02265___      1 ATGAGAAGAGGGATTATAGTAGAGAAAAATAAAAAATTCGTCACGTTGCT     50
                     ||||||||||||||.|||||||||||||||||||||||||||||||||||
RBAM_013230__      1 ATGAGAAGAGGGATCATAGTAGAGAAAAATAAAAAATTCGTCACGTTGCT     50

BSNT_02265___     51 GACCCCTGACGGACAATTTTTAAAAGCCAAAAATGATCGACACAGCTATG    100
                     .||||||||||||||||||||||||.|.||||||||||..|.||..|.||
RBAM_013230__     51 AACCCCTGACGGACAATTTTTAAAAACAAAAAATGATCACCGCACTTGTG    100

BSNT_02265___    101 AAATCGGAGAAGAAATCATGCTTCCGA--GTGAAACACGCATGGGCAGAA    148
                     ||||||||||.|||||  |.|.|.|||  |.|||||.||.|||||.||||
RBAM_013230__    101 AAATCGGAGAGGAAAT--TACGTTCGAAGGCGAAACGCGTATGGGAAGAA    148

BSNT_02265___    149 GGGCCAGCTTTTTTGATTTTTTTAAACTGCGCCCTTTCAAAATGGGGATT    198
                     ||||||||||||||||||||.|.||||||||||||||.|||.||||..|.
RBAM_013230__    149 GGGCCAGCTTTTTTGATTTTCTGAAACTGCGCCCTTTTAAATTGGGAGTG    198

BSNT_02265___    199 TTTACGATGACTGCTATTATGCTCTTTATTTTTATAGTTCTCCCCGTTTT    248
                     ||||||||||||||||||||..|.||||||||.||..|.|||||.|||||
RBAM_013230__    199 TTTACGATGACTGCTATTATTTTGTTTATTTTAATTTTGCTCCCGGTTTT    248

BSNT_02265___    249 TTCTAATAATAAGGCCTATGCGTATATGACAATCGATATCAATCCAAGCG    298
                     ||||.||||.||.||.||.|||||||||||..|.||.||.|||||.|||.
RBAM_013230__    249 TTCTGATAACAAAGCTTACGCGTATATGACGCTTGACATTAATCCCAGCA    298

BSNT_02265___    299 TCGAAATGGCGTTAAACAGCGATTATGAAGTGATTGAACTGACGCCTCTA    348
                     |.||||||||.|||||||||.|.||||||||.|||||||||||.||.||.
RBAM_013230__    299 TTGAAATGGCTTTAAACAGCAAATATGAAGTCATTGAACTGACACCGCTG    348

BSNT_02265___    349 AACGATGAGGGACAGA-AGGTCGTGAATGATATAGATGATTGGGAGAAG-    396
                     |||.|||| .|.||.| |||||.|.|.|||.||.|..|||| |||.||| 
RBAM_013230__    349 AACCATGA-CGCCAAACAGGTCATCAGTGACATCGGAGATT-GGAAAAGC    396

BSNT_02265___    397 ACTGATTTTAAAAAGGTGATTGACGATATTATAACCGACTGCAGTGAACA    446
                     |..||||||||..|.||.||.....|||||||.|||||.|||||..|.||
RBAM_013230__    397 AGCGATTTTAAGGAAGTCATCAGTAATATTATTACCGATTGCAGCAAGCA    446

BSNT_02265___    447 CGGGTATGTAAAAAAATCGAAAGAAATATTGATTTCCACTGTTTATGAAA    496
                     .||.||||||||..||||.|||||.||.||.||||||||.||||||||||
RBAM_013230__    447 TGGATATGTAAAGGAATCAAAAGAGATTTTAATTTCCACGGTTTATGAAA    496

BSNT_02265___    497 ACACAGAAGACAATACATAT-AAAAAGGCTGTGAAAAAACAGCTGAATGA    545
                     |.|||||.|||||||||||| |||||||| ||.||||||||||||..|||
RBAM_013230__    497 ATACAGATGACAATACATATAAAAAAGGC-GTTAAAAAACAGCTGGCTGA    545

BSNT_02265___    546 TGTGACTGAAAAATATAAAACGACATACCGCATGGAATCTCTCGAGTCAG    595
                     ..||||||||||||||||....||.||||...|..||||.||.||.||.|
RBAM_013230__    546 CATGACTGAAAAATATAAGGGCACCTACCAGGTCCAATCGCTTGAATCTG    595

BSNT_02265___    596 ATATGCAAACGAGGGAAAAAGCGAAGAAAGAAGGCGTCTCAACAGGCAGC    645
                     |||||.||||.||.||||||||.||..|.|||||..|.||||||||||||
RBAM_013230__    596 ATATGGAAACAAGAGAAAAAGCAAAACAGGAAGGGATGTCAACAGGCAGC    645

BSNT_02265___    646 TACATCAAATCAAATGAAAAGAATGACAATA-AAGATATAAAAGA---TG    691
                     |||||.|.|..|||.||||||||    ||.| ||||   ||||.|   ||
RBAM_013230__    646 TACATAAGAAGAAACGAAAAGAA----AACAGAAGA---AAAACAGCCTG    688

BSNT_02265___    692 ACTCCAGCAAACC-ATCCGG----GGAAGAGGATCAAAAGAGTGAT---G    733
                     |  ..|||||||| |  |||    |.||.| ||||||||   .|||   |
RBAM_013230__    689 A--AAAGCAAACCGA--CGGCAATGAAACA-GATCAAAA---AGATACCG    730

BSNT_02265___    734 AAAATGAGGATGAAAACACCGATCAAACTGACACCCAGGACAGC------    777
                     |||..||.|.|||..|.|.|||.||..|.||||  |||.|.|||      
RBAM_013230__    731 AAACAGACGCTGATCAAAGCGAGCAGCCGGACA--CAGAAAAGCCGGCGG    778

BSNT_02265___    778 ---AAGCAAGGA--------GATAATGAA----CAGCTGAATGATGCGGA    812
                        |.|.||.||        |||.|.|||    ||||.||  ||.||   
RBAM_013230__    779 CTGATGAAAAGACAGCTCCTGATGAAGAAAAGGCAGCAGA--GAAGC---    823

BSNT_02265___    813 TTCCGGAGACCA------------------GAAAGAAGAGAAAGCGGATG    844
                       |.|||.||.|                  |.||||||.|||..||||..
RBAM_013230__    824 --CGGGAAACAATGAAACAACGCCCGGTACGGAAGAAGCGAAGCCGGACA    871

BSNT_02265___    845 ACCAGATTGATGATAGTGA-CAAAGATAAAAAAATAAAG-----GAATCA    888
                     ..|||   ||.|..|.|.| ||||...||||||||..||     |.||||
RBAM_013230__    872 GTCAG---GACGGCAATCAGCAAACCGAAAAAAATGCAGCTTCCGGATCA    918

BSNT_02265___    889 GATGAAAACACAAATACCGAAAAAGATGGGG-ACCATGAGCAAACCCCAA    937
                     ||.|||||||||.|.|..|||.||||||||| |.|| |||||..||||||
RBAM_013230__    919 GAGGAAAACACACAGAAGGAACAAGATGGGGAAACA-GAGCAGCCCCCAA    967

BSNT_02265___    938 TACAAGATCCTCAAGATAAAGGAAATGAAAATAACGGCGCTGACAAGGGC    987
                     .||||.|||||||.||.||.||||||||.|              |||.||
RBAM_013230__    968 CACAAAATCCTCAGGAAAACGGAAATGACA--------------AAGAGC   1003

BSNT_02265___    988 CAAAGCCAA--TATCACA---GGGACTGGAACAATG------GTGAACA-   1025
                     |.||||.||  |||.|||   ...|||||||..|||      .|||||| 
RBAM_013230__   1004 CTAAGCAAAAGTATTACAATCATTACTGGAATCATGATCGCAATGAACAT   1053

BSNT_02265___   1026 AGGCAAGAA-CCGTTCTTCGTCCAGAAGGGATAACGCTTCAGACCGACGT   1074
                     .||   ||| ||..||..|.||..||||     |..|.|||||||||.|.
RBAM_013230__   1054 TGG---GAATCCTATCGGCATCATGAAG-----ATTCATCAGACCGAAGG   1095

BSNT_02265___   1075 AATCCAAACGGCTA-CAGCAGTGATA--ATAATTCAGCTCAAAATGAAGA   1121
                     |||||.|||||||| |.|||..||.|  |.|||.|.|.|.||.||.||.|
RBAM_013230__   1096 AATCCGAACGGCTACCGGCACGGAAAGGAGAATGCTGATAAATATCAAAA   1145

BSNT_02265___   1122 TTCGCCGAGTGCCCCCGGCGAATAA   1146
                     |||||||||....||||||||||||
RBAM_013230__   1146 TTCGCCGAGAAGTCCCGGCGAATAA   1170


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