Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02265 and RBAM_013230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_02265___ykrI.1.9828.seq
# -bsequence dna-align/RBAM_013230___ykrI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02265___ykrI-RBAM_013230___ykrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02265___ykrI-RBAM_013230___ykrI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02265___ykrI
# 2: RBAM_013230___ykrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1225
# Identity: 860/1225 (70.2%)
# Similarity: 860/1225 (70.2%)
# Gaps: 134/1225 (10.9%)
# Score: 2919.5
#
#
#=======================================
BSNT_02265___ 1 ATGAGAAGAGGGATTATAGTAGAGAAAAATAAAAAATTCGTCACGTTGCT 50
||||||||||||||.|||||||||||||||||||||||||||||||||||
RBAM_013230__ 1 ATGAGAAGAGGGATCATAGTAGAGAAAAATAAAAAATTCGTCACGTTGCT 50
BSNT_02265___ 51 GACCCCTGACGGACAATTTTTAAAAGCCAAAAATGATCGACACAGCTATG 100
.||||||||||||||||||||||||.|.||||||||||..|.||..|.||
RBAM_013230__ 51 AACCCCTGACGGACAATTTTTAAAAACAAAAAATGATCACCGCACTTGTG 100
BSNT_02265___ 101 AAATCGGAGAAGAAATCATGCTTCCGA--GTGAAACACGCATGGGCAGAA 148
||||||||||.||||| |.|.|.||| |.|||||.||.|||||.||||
RBAM_013230__ 101 AAATCGGAGAGGAAAT--TACGTTCGAAGGCGAAACGCGTATGGGAAGAA 148
BSNT_02265___ 149 GGGCCAGCTTTTTTGATTTTTTTAAACTGCGCCCTTTCAAAATGGGGATT 198
||||||||||||||||||||.|.||||||||||||||.|||.||||..|.
RBAM_013230__ 149 GGGCCAGCTTTTTTGATTTTCTGAAACTGCGCCCTTTTAAATTGGGAGTG 198
BSNT_02265___ 199 TTTACGATGACTGCTATTATGCTCTTTATTTTTATAGTTCTCCCCGTTTT 248
||||||||||||||||||||..|.||||||||.||..|.|||||.|||||
RBAM_013230__ 199 TTTACGATGACTGCTATTATTTTGTTTATTTTAATTTTGCTCCCGGTTTT 248
BSNT_02265___ 249 TTCTAATAATAAGGCCTATGCGTATATGACAATCGATATCAATCCAAGCG 298
||||.||||.||.||.||.|||||||||||..|.||.||.|||||.|||.
RBAM_013230__ 249 TTCTGATAACAAAGCTTACGCGTATATGACGCTTGACATTAATCCCAGCA 298
BSNT_02265___ 299 TCGAAATGGCGTTAAACAGCGATTATGAAGTGATTGAACTGACGCCTCTA 348
|.||||||||.|||||||||.|.||||||||.|||||||||||.||.||.
RBAM_013230__ 299 TTGAAATGGCTTTAAACAGCAAATATGAAGTCATTGAACTGACACCGCTG 348
BSNT_02265___ 349 AACGATGAGGGACAGA-AGGTCGTGAATGATATAGATGATTGGGAGAAG- 396
|||.|||| .|.||.| |||||.|.|.|||.||.|..|||| |||.|||
RBAM_013230__ 349 AACCATGA-CGCCAAACAGGTCATCAGTGACATCGGAGATT-GGAAAAGC 396
BSNT_02265___ 397 ACTGATTTTAAAAAGGTGATTGACGATATTATAACCGACTGCAGTGAACA 446
|..||||||||..|.||.||.....|||||||.|||||.|||||..|.||
RBAM_013230__ 397 AGCGATTTTAAGGAAGTCATCAGTAATATTATTACCGATTGCAGCAAGCA 446
BSNT_02265___ 447 CGGGTATGTAAAAAAATCGAAAGAAATATTGATTTCCACTGTTTATGAAA 496
.||.||||||||..||||.|||||.||.||.||||||||.||||||||||
RBAM_013230__ 447 TGGATATGTAAAGGAATCAAAAGAGATTTTAATTTCCACGGTTTATGAAA 496
BSNT_02265___ 497 ACACAGAAGACAATACATAT-AAAAAGGCTGTGAAAAAACAGCTGAATGA 545
|.|||||.|||||||||||| |||||||| ||.||||||||||||..|||
RBAM_013230__ 497 ATACAGATGACAATACATATAAAAAAGGC-GTTAAAAAACAGCTGGCTGA 545
BSNT_02265___ 546 TGTGACTGAAAAATATAAAACGACATACCGCATGGAATCTCTCGAGTCAG 595
..||||||||||||||||....||.||||...|..||||.||.||.||.|
RBAM_013230__ 546 CATGACTGAAAAATATAAGGGCACCTACCAGGTCCAATCGCTTGAATCTG 595
BSNT_02265___ 596 ATATGCAAACGAGGGAAAAAGCGAAGAAAGAAGGCGTCTCAACAGGCAGC 645
|||||.||||.||.||||||||.||..|.|||||..|.||||||||||||
RBAM_013230__ 596 ATATGGAAACAAGAGAAAAAGCAAAACAGGAAGGGATGTCAACAGGCAGC 645
BSNT_02265___ 646 TACATCAAATCAAATGAAAAGAATGACAATA-AAGATATAAAAGA---TG 691
|||||.|.|..|||.|||||||| ||.| |||| ||||.| ||
RBAM_013230__ 646 TACATAAGAAGAAACGAAAAGAA----AACAGAAGA---AAAACAGCCTG 688
BSNT_02265___ 692 ACTCCAGCAAACC-ATCCGG----GGAAGAGGATCAAAAGAGTGAT---G 733
| ..|||||||| | ||| |.||.| |||||||| .||| |
RBAM_013230__ 689 A--AAAGCAAACCGA--CGGCAATGAAACA-GATCAAAA---AGATACCG 730
BSNT_02265___ 734 AAAATGAGGATGAAAACACCGATCAAACTGACACCCAGGACAGC------ 777
|||..||.|.|||..|.|.|||.||..|.|||| |||.|.|||
RBAM_013230__ 731 AAACAGACGCTGATCAAAGCGAGCAGCCGGACA--CAGAAAAGCCGGCGG 778
BSNT_02265___ 778 ---AAGCAAGGA--------GATAATGAA----CAGCTGAATGATGCGGA 812
|.|.||.|| |||.|.||| ||||.|| ||.||
RBAM_013230__ 779 CTGATGAAAAGACAGCTCCTGATGAAGAAAAGGCAGCAGA--GAAGC--- 823
BSNT_02265___ 813 TTCCGGAGACCA------------------GAAAGAAGAGAAAGCGGATG 844
|.|||.||.| |.||||||.|||..||||..
RBAM_013230__ 824 --CGGGAAACAATGAAACAACGCCCGGTACGGAAGAAGCGAAGCCGGACA 871
BSNT_02265___ 845 ACCAGATTGATGATAGTGA-CAAAGATAAAAAAATAAAG-----GAATCA 888
..||| ||.|..|.|.| ||||...||||||||..|| |.||||
RBAM_013230__ 872 GTCAG---GACGGCAATCAGCAAACCGAAAAAAATGCAGCTTCCGGATCA 918
BSNT_02265___ 889 GATGAAAACACAAATACCGAAAAAGATGGGG-ACCATGAGCAAACCCCAA 937
||.|||||||||.|.|..|||.||||||||| |.|| |||||..||||||
RBAM_013230__ 919 GAGGAAAACACACAGAAGGAACAAGATGGGGAAACA-GAGCAGCCCCCAA 967
BSNT_02265___ 938 TACAAGATCCTCAAGATAAAGGAAATGAAAATAACGGCGCTGACAAGGGC 987
.||||.|||||||.||.||.||||||||.| |||.||
RBAM_013230__ 968 CACAAAATCCTCAGGAAAACGGAAATGACA--------------AAGAGC 1003
BSNT_02265___ 988 CAAAGCCAA--TATCACA---GGGACTGGAACAATG------GTGAACA- 1025
|.||||.|| |||.||| ...|||||||..||| .||||||
RBAM_013230__ 1004 CTAAGCAAAAGTATTACAATCATTACTGGAATCATGATCGCAATGAACAT 1053
BSNT_02265___ 1026 AGGCAAGAA-CCGTTCTTCGTCCAGAAGGGATAACGCTTCAGACCGACGT 1074
.|| ||| ||..||..|.||..|||| |..|.|||||||||.|.
RBAM_013230__ 1054 TGG---GAATCCTATCGGCATCATGAAG-----ATTCATCAGACCGAAGG 1095
BSNT_02265___ 1075 AATCCAAACGGCTA-CAGCAGTGATA--ATAATTCAGCTCAAAATGAAGA 1121
|||||.|||||||| |.|||..||.| |.|||.|.|.|.||.||.||.|
RBAM_013230__ 1096 AATCCGAACGGCTACCGGCACGGAAAGGAGAATGCTGATAAATATCAAAA 1145
BSNT_02265___ 1122 TTCGCCGAGTGCCCCCGGCGAATAA 1146
|||||||||....||||||||||||
RBAM_013230__ 1146 TTCGCCGAGAAGTCCCGGCGAATAA 1170
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