Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02261 and RBAM_013210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_02261___ykoY.1.9828.seq
# -bsequence dna-align/RBAM_013210___ykoY.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02261___ykoY-RBAM_013210___ykoY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02261___ykoY-RBAM_013210___ykoY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02261___ykoY
# 2: RBAM_013210___ykoY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1003
# Identity: 607/1003 (60.5%)
# Similarity: 607/1003 (60.5%)
# Gaps: 218/1003 (21.7%)
# Score: 2046.0
#
#
#=======================================
BSNT_02261___ 1 ATGTATTCCGGAAACAAAGTCGTCATTTCATGGATTGTATCCATCGGCTT 50
RBAM_013210__ 0 -------------------------------------------------- 0
BSNT_02261___ 51 TGTTGGCATGCCTGAATTCATGTCTAGCAAGACCTTTGCCTTATGTCGGC 100
RBAM_013210__ 0 -------------------------------------------------- 0
BSNT_02261___ 101 AAAGGTCTTTTTTGCATGGTCCGGCCGGCATAAGATCGGATGA-AGAGAA 149
|||| |||.||
RBAM_013210__ 1 ---------------------------------------ATGATAGAAAA 11
BSNT_02261___ 150 AGAAAACAACTTTTTTGGGAGGGTATCATTTATGGA-TGCA----GCATT 194
|..|||| |||||| .||||| ||.| |||||
RBAM_013210__ 12 AAGAAAC----------GGAGGG-------AATGGATTGGACTTTGCATT 44
BSNT_02261___ 195 ATTATTAGAGTATGGTTGGGTTCTTCTCGTCTTGATCGGGCTGGAAGGGA 244
||||||.||||||||.||||||||||||||.||.||||||||||||||||
RBAM_013210__ 45 ATTATTGGAGTATGGATGGGTTCTTCTCGTTTTAATCGGGCTGGAAGGGA 94
BSNT_02261___ 245 TTTTAGCCGCCGATAACGCGCTGGTTATGGCGGTAATGGTAAAACATTTG 294
||||.||.||.||||||||||||||.|||||.||.|||||.||.|||.|.
RBAM_013210__ 95 TTTTGGCGGCGGATAACGCGCTGGTGATGGCTGTGATGGTGAAGCATCTT 144
BSNT_02261___ 295 CCGGAGGAAAAAAGAAAAAAAGCGTTATTTTATGGATTGGCAGGGGCTTT 344
||.||..||.||||.||.||.||.||||||||.||||||||.||.||.||
RBAM_013210__ 145 CCTGAAAAACAAAGGAAGAAGGCTTTATTTTACGGATTGGCGGGCGCATT 194
BSNT_02261___ 345 TGTTCTGCGATTTGGCTCTTTATTCGCCATTTCATTTTTGGTCAACGTAT 394
|.||.||||.||.||.||..|.|||||||||||.|||.||||.||.||.|
RBAM_013210__ 195 TATTTTGCGTTTCGGGTCGCTGTTCGCCATTTCTTTTCTGGTGAATGTTT 244
BSNT_02261___ 395 GGCAGGTTCAAGCGATTGGCGCGATCTATTTGCTGTATATCTCAGCAAGC 444
|||||||.||.||..|.|||||..|.|||.||.|.||.||..|.|..|||
RBAM_013210__ 245 GGCAGGTCCAGGCCGTCGGCGCTTTATATCTGTTTTACATTGCGGTCAGC 294
BSNT_02261___ 445 CACTTATTGAAAAGATATGTATTTAAGAAAGAAGACAC---ACATAAAGA 491
||.||..||||..|.||||||||| |||||..||.| .||.|||
RBAM_013210__ 295 CATTTGCTGAAGCGGTATGTATTT---AAAGATAACGCCGGTCAGAAA-- 339
BSNT_02261___ 492 GACG----AAGCAAAGCGGTTTTTGGCCGACTGTTTTAAAAGTTGAACTG 537
||| ||| |||||||.|||||||.|||.||.||.|||||.||.||.
RBAM_013210__ 340 -ACGCAGAAAG-AAAGCGGGTTTTGGCAGACAGTCTTGAAAGTGGAGCTC 387
BSNT_02261___ 538 GCAGATATCGCGTTTGCTGTTGATTCCATCTTAGCAGCAGTAGCGCTGGC 587
||.||.|||||.|||||.|||||||||||.|||||.||.||.|||||.||
RBAM_013210__ 388 GCGGACATCGCTTTTGCCGTTGATTCCATTTTAGCGGCGGTCGCGCTTGC 437
BSNT_02261___ 588 GGTTACACTTCCTGGGACATCA-----CTCCCGAAGATCGGCGGACTT-G 631
.||.||.| |||.||||..||| ||.|| |||||||| ||| |
RBAM_013210__ 438 CGTAACGC-TCCCGGGAACTCAGCTTCCTGCC----ATCGGCGG-CTTGG 481
BSNT_02261___ 632 ACGGAGGACAATTTCTCGTCATTTTGGCCGGCGGTATCATCGGACTGGTG 681
||||.||.||.||||||||.|||||.||||||||..|.|||||..|..|.
RBAM_013210__ 482 ACGGCGGTCAGTTTCTCGTTATTTTAGCCGGCGGCGTAATCGGTTTAATC 531
BSNT_02261___ 682 ATCATGCGGTTTGCGGCTTCCATGTTTGTGAAGTTATTAAAGGAAC--GT 729
||.|||||.|||||.||.||.|||||.||....|||.|||| ||| |.
RBAM_013210__ 532 ATTATGCGTTTTGCTGCATCAATGTTCGTATCCTTACTAAA--AACCAGG 579
BSNT_02261___ 730 CCAAGCCTAGAAACAGCAGCCTTTGTGATTGTCGGCTGGGTCGGAGTGAA 779
||..||||.|||||.||.||.||||||||||||||.|||||.||.|||||
RBAM_013210__ 580 CCGGGCCTTGAAACGGCGGCATTTGTGATTGTCGGATGGGTAGGCGTGAA 629
BSNT_02261___ 780 GCTTGCTTTATATACGCTTGCCCATCGCGACATAGCGGT-TGTTTCTGAG 828
|||.|||.|.|||||..|.||||||...||..| |||| |..|||.| |
RBAM_013210__ 630 GCTCGCTCTTTATACATTGGCCCATGAGGAACT--CGGTATCATTCCG-G 676
BSNT_02261___ 829 C--ACTTTATTCATTCTGGAACATGGAAGCTGATATTCTGGGGTGTCTTA 876
| |..|.||.|||||.|...|.|||||..|.||.|||||||..||..|.
RBAM_013210__ 677 CAGATGTCATCCATTCGGCGGCCTGGAAAATCATTTTCTGGGCGGTTCTG 726
BSNT_02261___ 877 GCAGCAATCGCGGTTTGCGGCTGGTTTATGTCAGGTGGGAAA-AAACAGC 925
||.||.||.|||||||||||.||||||||||||||.|..||| |||.|
RBAM_013210__ 727 GCTGCCATTGCGGTTTGCGGATGGTTTATGTCAGGAGCAAAACAAATA-- 774
BSNT_02261___ 926 CGGAG---GGCGCACAAAACGAACAAAGAAACAGCACCCGTGAACGGGCG 972
||| |||||..||...|||.||||| ||||..|||
RBAM_013210__ 775 --GAGTCTGGCGCGGAATCGGAAAAAAGA------------GAACACGCG 810
BSNT_02261___ 973 TAA 975
|||
RBAM_013210__ 811 TAA 813
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