Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02261 and RBAM_013210

See Amino acid alignment / Visit BSNT_02261 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:56
# Commandline: needle
#    -asequence dna-align/BSNT_02261___ykoY.1.9828.seq
#    -bsequence dna-align/RBAM_013210___ykoY.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02261___ykoY-RBAM_013210___ykoY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02261___ykoY-RBAM_013210___ykoY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02261___ykoY
# 2: RBAM_013210___ykoY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1003
# Identity:     607/1003 (60.5%)
# Similarity:   607/1003 (60.5%)
# Gaps:         218/1003 (21.7%)
# Score: 2046.0
# 
#
#=======================================

BSNT_02261___      1 ATGTATTCCGGAAACAAAGTCGTCATTTCATGGATTGTATCCATCGGCTT     50
                                                                       
RBAM_013210__      0 --------------------------------------------------      0

BSNT_02261___     51 TGTTGGCATGCCTGAATTCATGTCTAGCAAGACCTTTGCCTTATGTCGGC    100
                                                                       
RBAM_013210__      0 --------------------------------------------------      0

BSNT_02261___    101 AAAGGTCTTTTTTGCATGGTCCGGCCGGCATAAGATCGGATGA-AGAGAA    149
                                                            |||| |||.||
RBAM_013210__      1 ---------------------------------------ATGATAGAAAA     11

BSNT_02261___    150 AGAAAACAACTTTTTTGGGAGGGTATCATTTATGGA-TGCA----GCATT    194
                     |..||||          ||||||       .||||| ||.|    |||||
RBAM_013210__     12 AAGAAAC----------GGAGGG-------AATGGATTGGACTTTGCATT     44

BSNT_02261___    195 ATTATTAGAGTATGGTTGGGTTCTTCTCGTCTTGATCGGGCTGGAAGGGA    244
                     ||||||.||||||||.||||||||||||||.||.||||||||||||||||
RBAM_013210__     45 ATTATTGGAGTATGGATGGGTTCTTCTCGTTTTAATCGGGCTGGAAGGGA     94

BSNT_02261___    245 TTTTAGCCGCCGATAACGCGCTGGTTATGGCGGTAATGGTAAAACATTTG    294
                     ||||.||.||.||||||||||||||.|||||.||.|||||.||.|||.|.
RBAM_013210__     95 TTTTGGCGGCGGATAACGCGCTGGTGATGGCTGTGATGGTGAAGCATCTT    144

BSNT_02261___    295 CCGGAGGAAAAAAGAAAAAAAGCGTTATTTTATGGATTGGCAGGGGCTTT    344
                     ||.||..||.||||.||.||.||.||||||||.||||||||.||.||.||
RBAM_013210__    145 CCTGAAAAACAAAGGAAGAAGGCTTTATTTTACGGATTGGCGGGCGCATT    194

BSNT_02261___    345 TGTTCTGCGATTTGGCTCTTTATTCGCCATTTCATTTTTGGTCAACGTAT    394
                     |.||.||||.||.||.||..|.|||||||||||.|||.||||.||.||.|
RBAM_013210__    195 TATTTTGCGTTTCGGGTCGCTGTTCGCCATTTCTTTTCTGGTGAATGTTT    244

BSNT_02261___    395 GGCAGGTTCAAGCGATTGGCGCGATCTATTTGCTGTATATCTCAGCAAGC    444
                     |||||||.||.||..|.|||||..|.|||.||.|.||.||..|.|..|||
RBAM_013210__    245 GGCAGGTCCAGGCCGTCGGCGCTTTATATCTGTTTTACATTGCGGTCAGC    294

BSNT_02261___    445 CACTTATTGAAAAGATATGTATTTAAGAAAGAAGACAC---ACATAAAGA    491
                     ||.||..||||..|.|||||||||   |||||..||.|   .||.|||  
RBAM_013210__    295 CATTTGCTGAAGCGGTATGTATTT---AAAGATAACGCCGGTCAGAAA--    339

BSNT_02261___    492 GACG----AAGCAAAGCGGTTTTTGGCCGACTGTTTTAAAAGTTGAACTG    537
                      |||    ||| |||||||.|||||||.|||.||.||.|||||.||.||.
RBAM_013210__    340 -ACGCAGAAAG-AAAGCGGGTTTTGGCAGACAGTCTTGAAAGTGGAGCTC    387

BSNT_02261___    538 GCAGATATCGCGTTTGCTGTTGATTCCATCTTAGCAGCAGTAGCGCTGGC    587
                     ||.||.|||||.|||||.|||||||||||.|||||.||.||.|||||.||
RBAM_013210__    388 GCGGACATCGCTTTTGCCGTTGATTCCATTTTAGCGGCGGTCGCGCTTGC    437

BSNT_02261___    588 GGTTACACTTCCTGGGACATCA-----CTCCCGAAGATCGGCGGACTT-G    631
                     .||.||.| |||.||||..|||     ||.||    |||||||| ||| |
RBAM_013210__    438 CGTAACGC-TCCCGGGAACTCAGCTTCCTGCC----ATCGGCGG-CTTGG    481

BSNT_02261___    632 ACGGAGGACAATTTCTCGTCATTTTGGCCGGCGGTATCATCGGACTGGTG    681
                     ||||.||.||.||||||||.|||||.||||||||..|.|||||..|..|.
RBAM_013210__    482 ACGGCGGTCAGTTTCTCGTTATTTTAGCCGGCGGCGTAATCGGTTTAATC    531

BSNT_02261___    682 ATCATGCGGTTTGCGGCTTCCATGTTTGTGAAGTTATTAAAGGAAC--GT    729
                     ||.|||||.|||||.||.||.|||||.||....|||.||||  |||  |.
RBAM_013210__    532 ATTATGCGTTTTGCTGCATCAATGTTCGTATCCTTACTAAA--AACCAGG    579

BSNT_02261___    730 CCAAGCCTAGAAACAGCAGCCTTTGTGATTGTCGGCTGGGTCGGAGTGAA    779
                     ||..||||.|||||.||.||.||||||||||||||.|||||.||.|||||
RBAM_013210__    580 CCGGGCCTTGAAACGGCGGCATTTGTGATTGTCGGATGGGTAGGCGTGAA    629

BSNT_02261___    780 GCTTGCTTTATATACGCTTGCCCATCGCGACATAGCGGT-TGTTTCTGAG    828
                     |||.|||.|.|||||..|.||||||...||..|  |||| |..|||.| |
RBAM_013210__    630 GCTCGCTCTTTATACATTGGCCCATGAGGAACT--CGGTATCATTCCG-G    676

BSNT_02261___    829 C--ACTTTATTCATTCTGGAACATGGAAGCTGATATTCTGGGGTGTCTTA    876
                     |  |..|.||.|||||.|...|.|||||..|.||.|||||||..||..|.
RBAM_013210__    677 CAGATGTCATCCATTCGGCGGCCTGGAAAATCATTTTCTGGGCGGTTCTG    726

BSNT_02261___    877 GCAGCAATCGCGGTTTGCGGCTGGTTTATGTCAGGTGGGAAA-AAACAGC    925
                     ||.||.||.|||||||||||.||||||||||||||.|..||| |||.|  
RBAM_013210__    727 GCTGCCATTGCGGTTTGCGGATGGTTTATGTCAGGAGCAAAACAAATA--    774

BSNT_02261___    926 CGGAG---GGCGCACAAAACGAACAAAGAAACAGCACCCGTGAACGGGCG    972
                       |||   |||||..||...|||.|||||            ||||..|||
RBAM_013210__    775 --GAGTCTGGCGCGGAATCGGAAAAAAGA------------GAACACGCG    810

BSNT_02261___    973 TAA    975
                     |||
RBAM_013210__    811 TAA    813


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