Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02258 and RBAM_013200

See Amino acid alignment / Visit BSNT_02258 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:56
# Commandline: needle
#    -asequence dna-align/BSNT_02258___ykoX.1.9828.seq
#    -bsequence dna-align/RBAM_013200___ykoX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02258___ykoX-RBAM_013200___ykoX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02258___ykoX-RBAM_013200___ykoX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02258___ykoX
# 2: RBAM_013200___ykoX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 658
# Identity:     429/658 (65.2%)
# Similarity:   429/658 (65.2%)
# Gaps:         110/658 (16.7%)
# Score: 1453.0
# 
#
#=======================================

BSNT_02258___      1 GTGGCTATCGAAGAGCTGGTTATGTCATGGATAGAAGCATTTAAAAGCTT     50
                                                                       
RBAM_013200__      0 --------------------------------------------------      0

BSNT_02258___     51 ATCTTATTTTGGAATATTTCTAGCGCTCAGTATTGAGTTTATCCCGGCCG    100
                             |||           |||||||||||.||.||.||||||||.|
RBAM_013200__      1 --------TTG-----------GCGCTCAGTATAGAATTCATCCCGGCGG     31

BSNT_02258___    101 AAGTCG-TCTTGCCGCTTGCGGGCTATTGGGTATCTAAAGGCGATATGAC    149
                     ||.|.| |||| ||||||||||||||||||||.||.|||||.||||||||
RBAM_013200__     32 AAATTGTTCTT-CCGCTTGCGGGCTATTGGGTCTCAAAAGGGGATATGAC     80

BSNT_02258___    150 ACTTGCCGG---CGTTGTTTTGGCAGGATCGCTTGGAGGAGTGGCCGGTC    196
                     .||||||||   || |||||  ||.||.|||||.||.||.||..|.||||
RBAM_013200__     81 GCTTGCCGGGACCG-TGTTT--GCCGGTTCGCTCGGCGGTGTTTCAGGTC    127

BSNT_02258___    197 CGCTTACGCTGTATTGGATAGGCCGGTACGGAGGAAGGCCGTTTCT--TG    244
                     |||||....|.|||.|.||.|||.||...||.||..||||||||.|  ||
RBAM_013200__    128 CGCTTGTCTTATATGGAATCGGCAGGCTGGGCGGTCGGCCGTTTTTGCTG    177

BSNT_02258___    245 AACGTTTTGGGAAGTATCTCTTTATTAAACCTGAAGCGCTTGATAAGTCA    294
                     ||  .|.|||.||||||.|.|..||.|||||.|||.|.||..|.||.|||
RBAM_013200__    178 AA--ATATGGAAAGTATATATGGATAAAACCCGAATCCCTGCAGAAATCA    225

BSNT_02258___    295 GATAAATT-TTTCAAAAAACATGGTGGCTTTGTCGCGTTCAGCGGCCGTT    343
                     |||.|.|| |||| |.||.||.||.||.||.|||||||||||||||||||
RBAM_013200__    226 GATGATTTCTTTC-AGAAGCACGGAGGTTTGGTCGCGTTCAGCGGCCGTT    274

BSNT_02258___    344 TCTTGCCTGGCATCAGGACATTGATTTCCATACCGTGCGGAATTGCAAAA    393
                     |..|.||.||..|||||||..|||||||..|.||||||||.|||||.||.
RBAM_013200__    275 TTATACCGGGGGTCAGGACGCTGATTTCTTTGCCGTGCGGCATTGCGAAG    324

BSNT_02258___    394 ATGAATGTTTGGGTGTTTTCGCTTTATACATTCAT--TGCTATGCTTCCG    441
                     ||||||||.|||||.||.||.||.|||||||  ||  .||.|||||.|||
RBAM_013200__    325 ATGAATGTCTGGGTCTTCTCTCTATATACAT--ATGCAGCGATGCTGCCG    372

BSNT_02258___    442 ATTACATTTGTATATGTTTATCTCGGTGTGAAGCTCGGTGAAAATTGGAA    491
                     ||||||||||..||.||.||.|||||..||||.|||||.|||||||||||
RBAM_013200__    373 ATTACATTTGCTTACGTATACCTCGGAATGAAACTCGGGGAAAATTGGAA    422

BSNT_02258___    492 GGAA--GTCGGCTCTATTCTTGATCAATATATGCTTCCGATCGGGATAGC    539
                       ||  |||||.||.|||||.||||||||||||||.|||.||||.|||..
RBAM_013200__    423 --AAGCGTCGGTTCCATTCTCGATCAATATATGCTGCCGCTCGGTATATT    470

BSNT_02258___    540 CATTTTGGCGCTTTTCCTGCTCTACTTACTGATG-----AAAAAGAGGAA    584
                     ||||.||..||||.||.|.||.|      .||||     |||.|||.|| 
RBAM_013200__    471 CATTGTGTTGCTTCTCATTCTTT------GGATGTTTTTAAAGAGAAGA-    513

BSNT_02258___    585 GAAAC-GCACGC--ACTCCGAACAATTATCTGTATTTTTGAAAAA---TA    628
                      |||| ||..||  |..|.|||.||.|.|||..||||.|.|||||   ||
RBAM_013200__    514 -AAACAGCGGGCCAAAACAGAAAAAATTTCTCAATTTGTTAAAAAAGTTA    562

BSNT_02258___    629 AACGTTGA    636
                     |.||||||
RBAM_013200__    563 AGCGTTGA    570


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