Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02258 and RBAM_013200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_02258___ykoX.1.9828.seq
# -bsequence dna-align/RBAM_013200___ykoX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02258___ykoX-RBAM_013200___ykoX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02258___ykoX-RBAM_013200___ykoX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02258___ykoX
# 2: RBAM_013200___ykoX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 658
# Identity: 429/658 (65.2%)
# Similarity: 429/658 (65.2%)
# Gaps: 110/658 (16.7%)
# Score: 1453.0
#
#
#=======================================
BSNT_02258___ 1 GTGGCTATCGAAGAGCTGGTTATGTCATGGATAGAAGCATTTAAAAGCTT 50
RBAM_013200__ 0 -------------------------------------------------- 0
BSNT_02258___ 51 ATCTTATTTTGGAATATTTCTAGCGCTCAGTATTGAGTTTATCCCGGCCG 100
||| |||||||||||.||.||.||||||||.|
RBAM_013200__ 1 --------TTG-----------GCGCTCAGTATAGAATTCATCCCGGCGG 31
BSNT_02258___ 101 AAGTCG-TCTTGCCGCTTGCGGGCTATTGGGTATCTAAAGGCGATATGAC 149
||.|.| |||| ||||||||||||||||||||.||.|||||.||||||||
RBAM_013200__ 32 AAATTGTTCTT-CCGCTTGCGGGCTATTGGGTCTCAAAAGGGGATATGAC 80
BSNT_02258___ 150 ACTTGCCGG---CGTTGTTTTGGCAGGATCGCTTGGAGGAGTGGCCGGTC 196
.|||||||| || ||||| ||.||.|||||.||.||.||..|.||||
RBAM_013200__ 81 GCTTGCCGGGACCG-TGTTT--GCCGGTTCGCTCGGCGGTGTTTCAGGTC 127
BSNT_02258___ 197 CGCTTACGCTGTATTGGATAGGCCGGTACGGAGGAAGGCCGTTTCT--TG 244
|||||....|.|||.|.||.|||.||...||.||..||||||||.| ||
RBAM_013200__ 128 CGCTTGTCTTATATGGAATCGGCAGGCTGGGCGGTCGGCCGTTTTTGCTG 177
BSNT_02258___ 245 AACGTTTTGGGAAGTATCTCTTTATTAAACCTGAAGCGCTTGATAAGTCA 294
|| .|.|||.||||||.|.|..||.|||||.|||.|.||..|.||.|||
RBAM_013200__ 178 AA--ATATGGAAAGTATATATGGATAAAACCCGAATCCCTGCAGAAATCA 225
BSNT_02258___ 295 GATAAATT-TTTCAAAAAACATGGTGGCTTTGTCGCGTTCAGCGGCCGTT 343
|||.|.|| |||| |.||.||.||.||.||.|||||||||||||||||||
RBAM_013200__ 226 GATGATTTCTTTC-AGAAGCACGGAGGTTTGGTCGCGTTCAGCGGCCGTT 274
BSNT_02258___ 344 TCTTGCCTGGCATCAGGACATTGATTTCCATACCGTGCGGAATTGCAAAA 393
|..|.||.||..|||||||..|||||||..|.||||||||.|||||.||.
RBAM_013200__ 275 TTATACCGGGGGTCAGGACGCTGATTTCTTTGCCGTGCGGCATTGCGAAG 324
BSNT_02258___ 394 ATGAATGTTTGGGTGTTTTCGCTTTATACATTCAT--TGCTATGCTTCCG 441
||||||||.|||||.||.||.||.||||||| || .||.|||||.|||
RBAM_013200__ 325 ATGAATGTCTGGGTCTTCTCTCTATATACAT--ATGCAGCGATGCTGCCG 372
BSNT_02258___ 442 ATTACATTTGTATATGTTTATCTCGGTGTGAAGCTCGGTGAAAATTGGAA 491
||||||||||..||.||.||.|||||..||||.|||||.|||||||||||
RBAM_013200__ 373 ATTACATTTGCTTACGTATACCTCGGAATGAAACTCGGGGAAAATTGGAA 422
BSNT_02258___ 492 GGAA--GTCGGCTCTATTCTTGATCAATATATGCTTCCGATCGGGATAGC 539
|| |||||.||.|||||.||||||||||||||.|||.||||.|||..
RBAM_013200__ 423 --AAGCGTCGGTTCCATTCTCGATCAATATATGCTGCCGCTCGGTATATT 470
BSNT_02258___ 540 CATTTTGGCGCTTTTCCTGCTCTACTTACTGATG-----AAAAAGAGGAA 584
||||.||..||||.||.|.||.| .|||| |||.|||.||
RBAM_013200__ 471 CATTGTGTTGCTTCTCATTCTTT------GGATGTTTTTAAAGAGAAGA- 513
BSNT_02258___ 585 GAAAC-GCACGC--ACTCCGAACAATTATCTGTATTTTTGAAAAA---TA 628
|||| ||..|| |..|.|||.||.|.|||..||||.|.||||| ||
RBAM_013200__ 514 -AAACAGCGGGCCAAAACAGAAAAAATTTCTCAATTTGTTAAAAAAGTTA 562
BSNT_02258___ 629 AACGTTGA 636
|.||||||
RBAM_013200__ 563 AGCGTTGA 570
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