Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02245 and RBAM_013170

See Amino acid alignment / Visit BSNT_02245 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:56
# Commandline: needle
#    -asequence dna-align/BSNT_02245.1.9828.seq
#    -bsequence dna-align/RBAM_013170___ykoP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02245-RBAM_013170___ykoP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02245-RBAM_013170___ykoP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02245
# 2: RBAM_013170___ykoP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 678
# Identity:     396/678 (58.4%)
# Similarity:   396/678 (58.4%)
# Gaps:         156/678 (23.0%)
# Score: 1212.5
# 
#
#=======================================

BSNT_02245         1 ATGACAGTCCTCCTAAAAAAATATGGCAACTATATTTTGAGGAGAACGTT     50
                                                                       
RBAM_013170__      0 --------------------------------------------------      0

BSNT_02245        51 CACAAAATATAAGGGTGTTTTTGATCATAAGGAAGGTGAAAAGATGAAAA    100
                                                        ||||.|||       
RBAM_013170__      1 -----------------------------------GTGAGAAG-------      8

BSNT_02245       101 CTTGTTTCCTTTCCATATGGAGAGTGGTTGACCCGATTTATTTCTTTTTT    150
                      .|||.|.||.||.||||||....|..||||.|||.||||||||||.|||
RBAM_013170__      9 -CTGTCTGCTGTCTATATGGTACTTACTTGATCCGCTTTATTTCTTCTTT     57

BSNT_02245       151 TCAAGGCTGACCTTGGTTGACAAA----GATCGTAAAAGCGTCTTTCGAG    196
                     .|..|||||||..||.||||.|||    .||||    |..||.||.||.|
RBAM_013170__     58 ACCCGGCTGACGCTGATTGATAAACGGCAATCG----AATGTATTCCGCG    103

BSNT_02245       197 TCAGGCTGACGAAGTACAAAGGACATCATGTCGTGCTTAGCGACGGAACG    246
                     ||.|..||||.|..||.||||||.|..|.|||.|.||.||||||||||| 
RBAM_013170__    104 TCCGTTTGACTAGATATAAAGGAAAAGAAGTCATCCTGAGCGACGGAAC-    152

BSNT_02245       247 CATA--TAAGAAAAAATGATGTGCTCGTTAAAATCCACCTGCATAACATA    294
                     ||.|  ||| ||||||.||.|||.|.|||||.||.||.||.|||||..|.
RBAM_013170__    153 CAGAATTAA-AAAAAACGACGTGTTAGTTAAGATTCATCTTCATAATGTC    201

BSNT_02245       295 AAGCTGATCAGGGAGCTGCAAAGC--ATTGAGAGCGCAGTCAGAAAGGGA    342
                     ||.||..|.|..|||||||  |||  |||||.|||||.|||||||.|||.
RBAM_013170__    202 AAACTCCTGAAAGAGCTGC--AGCCTATTGAAAGCGCGGTCAGAAGGGGG    249

BSNT_02245       343 ATCATTATTTATCAGAAAGTATATCAATCGATGCCGCTTCTTTT---GGA    389
                     ||.||..|.||||||||.|||||||||||.|||||   ||.|||   |||
RBAM_013170__    250 ATTATGCTATATCAGAAGGTATATCAATCCATGCC---TCATTTAGCGGA    296

BSNT_02245       390 TTACATCAATAATCACAAAAAAAGTGAAA----AAATTAAAGGGA-TTGT    434
                     |||.||   |||.||..|.|||.| ||||    |.||| |||||| |.||
RBAM_013170__    297 TTATAT---TAACCAGCATAAACG-GAAAGACGAGATT-AAGGGAGTCGT    341

BSNT_02245       435 GGGCATTACAATGCTTGACAAAGGTGTGGAAAGGCTCGGTTTTGATGTGG    484
                     .|||||||||||||||.|.|||||.|.||..||.|||||||||||||||.
RBAM_013170__    342 CGGCATTACAATGCTTCATAAAGGAGCGGCGAGACTCGGTTTTGATGTGA    391

BSNT_02245       485 TCACCCCGGTCAACCCTTTTTACAGG-TGCTTTAA-AAAGATC-ACACAT    531
                     |.|..|||..||.|...|..|||||| || ||||| ||||  | .|.|||
RBAM_013170__    392 TAAAACCGTCCAGCGGCTGCTACAGGCTG-TTTAAGAAAG--CGGCCCAT    438

BSNT_02245       532 ATACCGATTTTTTATCTCACTTCAAAGCAGGTGAGCTTGCGGCGTTTACC    581
                     ||.||||||||.||..|||||.||||.|||.|.|.|.|           |
RBAM_013170__    439 ATTCCGATTTTATACTTCACTGCAAAACAGCTCACCCT-----------C    477

BSNT_02245       582 GAATACA-----------TCCTATTTGTTTATTTCGAAAGAAAAGCTGCA    620
                     .||.|||           |.||||||.||||||||.||||||||..||..
RBAM_013170__    478 AAAAACATTCCTTACTCCTGCTATTTATTTATTTCCAAAGAAAAATTGAT    527

BSNT_02245       621 GAAAACCTATCAAA--AAAAAGA-CTGA    645
                     |...||.|||||.|  .|||||| ||||
RBAM_013170__    528 GTGCACGTATCAGACTGAAAAGAGCTGA    555


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