Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02245 and RBAM_013170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_02245.1.9828.seq
# -bsequence dna-align/RBAM_013170___ykoP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02245-RBAM_013170___ykoP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02245-RBAM_013170___ykoP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02245
# 2: RBAM_013170___ykoP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 678
# Identity: 396/678 (58.4%)
# Similarity: 396/678 (58.4%)
# Gaps: 156/678 (23.0%)
# Score: 1212.5
#
#
#=======================================
BSNT_02245 1 ATGACAGTCCTCCTAAAAAAATATGGCAACTATATTTTGAGGAGAACGTT 50
RBAM_013170__ 0 -------------------------------------------------- 0
BSNT_02245 51 CACAAAATATAAGGGTGTTTTTGATCATAAGGAAGGTGAAAAGATGAAAA 100
||||.|||
RBAM_013170__ 1 -----------------------------------GTGAGAAG------- 8
BSNT_02245 101 CTTGTTTCCTTTCCATATGGAGAGTGGTTGACCCGATTTATTTCTTTTTT 150
.|||.|.||.||.||||||....|..||||.|||.||||||||||.|||
RBAM_013170__ 9 -CTGTCTGCTGTCTATATGGTACTTACTTGATCCGCTTTATTTCTTCTTT 57
BSNT_02245 151 TCAAGGCTGACCTTGGTTGACAAA----GATCGTAAAAGCGTCTTTCGAG 196
.|..|||||||..||.||||.||| .|||| |..||.||.||.|
RBAM_013170__ 58 ACCCGGCTGACGCTGATTGATAAACGGCAATCG----AATGTATTCCGCG 103
BSNT_02245 197 TCAGGCTGACGAAGTACAAAGGACATCATGTCGTGCTTAGCGACGGAACG 246
||.|..||||.|..||.||||||.|..|.|||.|.||.|||||||||||
RBAM_013170__ 104 TCCGTTTGACTAGATATAAAGGAAAAGAAGTCATCCTGAGCGACGGAAC- 152
BSNT_02245 247 CATA--TAAGAAAAAATGATGTGCTCGTTAAAATCCACCTGCATAACATA 294
||.| ||| ||||||.||.|||.|.|||||.||.||.||.|||||..|.
RBAM_013170__ 153 CAGAATTAA-AAAAAACGACGTGTTAGTTAAGATTCATCTTCATAATGTC 201
BSNT_02245 295 AAGCTGATCAGGGAGCTGCAAAGC--ATTGAGAGCGCAGTCAGAAAGGGA 342
||.||..|.|..||||||| ||| |||||.|||||.|||||||.|||.
RBAM_013170__ 202 AAACTCCTGAAAGAGCTGC--AGCCTATTGAAAGCGCGGTCAGAAGGGGG 249
BSNT_02245 343 ATCATTATTTATCAGAAAGTATATCAATCGATGCCGCTTCTTTT---GGA 389
||.||..|.||||||||.|||||||||||.||||| ||.||| |||
RBAM_013170__ 250 ATTATGCTATATCAGAAGGTATATCAATCCATGCC---TCATTTAGCGGA 296
BSNT_02245 390 TTACATCAATAATCACAAAAAAAGTGAAA----AAATTAAAGGGA-TTGT 434
|||.|| |||.||..|.|||.| |||| |.||| |||||| |.||
RBAM_013170__ 297 TTATAT---TAACCAGCATAAACG-GAAAGACGAGATT-AAGGGAGTCGT 341
BSNT_02245 435 GGGCATTACAATGCTTGACAAAGGTGTGGAAAGGCTCGGTTTTGATGTGG 484
.|||||||||||||||.|.|||||.|.||..||.|||||||||||||||.
RBAM_013170__ 342 CGGCATTACAATGCTTCATAAAGGAGCGGCGAGACTCGGTTTTGATGTGA 391
BSNT_02245 485 TCACCCCGGTCAACCCTTTTTACAGG-TGCTTTAA-AAAGATC-ACACAT 531
|.|..|||..||.|...|..|||||| || ||||| |||| | .|.|||
RBAM_013170__ 392 TAAAACCGTCCAGCGGCTGCTACAGGCTG-TTTAAGAAAG--CGGCCCAT 438
BSNT_02245 532 ATACCGATTTTTTATCTCACTTCAAAGCAGGTGAGCTTGCGGCGTTTACC 581
||.||||||||.||..|||||.||||.|||.|.|.|.| |
RBAM_013170__ 439 ATTCCGATTTTATACTTCACTGCAAAACAGCTCACCCT-----------C 477
BSNT_02245 582 GAATACA-----------TCCTATTTGTTTATTTCGAAAGAAAAGCTGCA 620
.||.||| |.||||||.||||||||.||||||||..||..
RBAM_013170__ 478 AAAAACATTCCTTACTCCTGCTATTTATTTATTTCCAAAGAAAAATTGAT 527
BSNT_02245 621 GAAAACCTATCAAA--AAAAAGA-CTGA 645
|...||.|||||.| .|||||| ||||
RBAM_013170__ 528 GTGCACGTATCAGACTGAAAAGAGCTGA 555
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