Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02237 and RBAM_013120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_02237___ykoK.1.9828.seq
# -bsequence dna-align/RBAM_013120___ykoK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02237___ykoK-RBAM_013120___ykoK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02237___ykoK-RBAM_013120___ykoK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02237___ykoK
# 2: RBAM_013120___ykoK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1373
# Identity: 1070/1373 (77.9%)
# Similarity: 1070/1373 (77.9%)
# Gaps: 34/1373 ( 2.5%)
# Score: 4143.0
#
#
#=======================================
BSNT_02237___ 1 ATGGTTCAAAACATGACCTATGACGAACTCATTTTACGCATCATTATTTT 50
|||||.||||||||||||||||||||||||||.||||||||.||||||||
RBAM_013120__ 1 ATGGTCCAAAACATGACCTATGACGAACTCATATTACGCATAATTATTTT 50
BSNT_02237___ 51 ACTGAGAGACGGGAAAATCAGGGATTTCAGAAGTGTTATTGATGAGCTTC 100
|.||.|.|||||.|||||.|..||.|||.|||...|.||.||||||||||
RBAM_013120__ 51 ATTGCGGGACGGAAAAATAAAAGAATTCCGAAACATGATAGATGAGCTTC 100
BSNT_02237___ 101 AGCCCTATGACATGGCATTTATTTTTAAAGAAATGCCGGAAAAACACCGC 150
||||||||||||||||||||.|.||||||||||||||||||||.|||||.
RBAM_013120__ 101 AGCCCTATGACATGGCATTTTTGTTTAAAGAAATGCCGGAAAAGCACCGG 150
BSNT_02237___ 151 GCCCGCTATTTATCTTATTTAACTGTAGACGATATCACTGATATGATCGG 200
|||||||||.|.||.|||.|.||.||.||.||.|||||.||.||||||||
RBAM_013120__ 151 GCCCGCTATCTGTCATATATGACGGTTGATGACATCACCGACATGATCGG 200
BSNT_02237___ 201 GGAGCTGGAACGCGAATTTCAGCTTGTCGTCTTAAATAAAGTCGGAAAAA 250
.||||||||.||.|||||||||||||.|||.||..||||||||||.||||
RBAM_013120__ 201 AGAGCTGGAGCGGGAATTTCAGCTTGCCGTTTTGCATAAAGTCGGTAAAA 250
BSNT_02237___ 251 CAAAAGCAACACTGGCGATGAACAAAATGGACAACGATGACCTCGCTCAA 300
|.|||||.||.||.||.|||||.||||||||.|||||.||.|||||...|
RBAM_013120__ 251 CGAAAGCCACTCTCGCAATGAATAAAATGGATAACGACGATCTCGCCGCA 300
BSNT_02237___ 301 TTGCTTGAAGAAATGGACGAAGAACTGAAGGAACAGCTTTTGTCCAGCAT 350
|||||.|||||.|||||.|||||||||||.|||||||||||.||||||||
RBAM_013120__ 301 TTGCTGGAAGAGATGGATGAAGAACTGAAAGAACAGCTTTTATCCAGCAT 350
BSNT_02237___ 351 GGAAGCGTCA-GAGTCAAAAGCTGTACAGCTCTTGATGAATTACCCGGCT 399
|||.|| |.| ||.|||||.||.||||||||.||||||||.||.|||...
RBAM_013120__ 351 GGAGGC-TGAGGAATCAAAGGCCGTACAGCTTTTGATGAACTATCCGCAA 399
BSNT_02237___ 400 GATTCAGCGGGACGCATGATGACAAACCGGTATGTGTGGATCCCTCAGCA 449
||.||.|||||.||.||||||||.|||||.|.|||.|||||.||.|||||
RBAM_013120__ 400 GAATCGGCGGGCCGGATGATGACGAACCGCTTTGTCTGGATTCCGCAGCA 449
BSNT_02237___ 450 TTACACGGTAAAAGACGCGGTCGTCAAACTGAAAAGCTTCGCTGAAATAG 499
|||.||.||||||||.|||||.||.||.|||||||||||.||.|||||.|
RBAM_013120__ 450 TTATACAGTAAAAGATGCGGTTGTGAAGCTGAAAAGCTTTGCAGAAATCG 499
BSNT_02237___ 500 CTGAATCGATCAACTACTTATATGTTATTAATGAAAGCAAACAGCTGGTT 549
|.|||||.||.||.||.||.||.||.||||||||.|||||.|||||.||.
RBAM_013120__ 500 CAGAATCAATAAATTATTTGTACGTGATTAATGACAGCAAGCAGCTTGTC 549
BSNT_02237___ 550 GGGGTTCTTTCCTACCGCGATTTGATTCTGGGTGAACCTGAAGAAAAGGT 599
||.||.||.||.|||.|.|||||.|||||.||.||.|||||.||.||.||
RBAM_013120__ 550 GGAGTGCTCTCTTACAGAGATTTAATTCTCGGCGAGCCTGAGGATAAAGT 599
BSNT_02237___ 600 GCAGGATTTAATGTTTACCCGCGTCATATCAGC--AGATGCTCTTCAGGA 647
|||||||.|.||||||||.||.|||||.||.|| .|.||||| ||.||
RBAM_013120__ 600 GCAGGATCTCATGTTTACACGTGTCATCTCGGCCGGGGTGCTC--CAAGA 647
BSNT_02237___ 648 CCAGGAAGAAGTTGCCCGCCTGATTGAACGTTACGATTTTTTGGCAATAC 697
||||||||||||.|||||.|||||..|.||.||.||.|||||.||.||.|
RBAM_013120__ 648 CCAGGAAGAAGTCGCCCGGCTGATCCAGCGGTATGACTTTTTAGCCATTC 697
BSNT_02237___ 698 CGGTTGTAGAAGAAAACAACGTGCTTGTCGGCATTGTGACAGTCGATGAT 747
|..|.||.||||||||..|.|||||||||||.|||||.||.|||||||||
RBAM_013120__ 698 CCATCGTGGAAGAAAATCATGTGCTTGTCGGTATTGTCACTGTCGATGAT 747
BSNT_02237___ 748 ATTATCGACGTCGTTATTCGTGAAGCTGATGAGGATTACGAAAAATTTGC 797
|||||.||||||||.|||...|||||.|||||.||||||||||||||.||
RBAM_013120__ 748 ATTATTGACGTCGTGATTAAAGAAGCCGATGAAGATTACGAAAAATTCGC 797
BSNT_02237___ 798 CGCTTCCGGTAAAGACATCACCTTTGACACAAAAGCTTACGTGGCGGCAT 847
.||.||||||||.|..||.||.|||||.||.|||||.|||||.|||||.|
RBAM_013120__ 798 AGCCTCCGGTAAGGCGATTACATTTGATACGAAAGCGTACGTTGCGGCGT 847
BSNT_02237___ 848 ACCGGCGCCTGCCATGGCTAATCTTACTCTTGTTTATCGGACTGATTTCA 897
||||.||..||||.|||||.||..|.||.||||||||||||.|||||||.
RBAM_013120__ 848 ACCGCCGTTTGCCGTGGCTCATTCTGCTTTTGTTTATCGGATTGATTTCC 897
BSNT_02237___ 898 GGAAGCATTATCAGCTATTTTGAAGATGCGCTGAAGCAGGTTGTAGCGCT 947
|||||||||.|.|..||||||||||||.|..||.|..|.||.||.||.||
RBAM_013120__ 898 GGAAGCATTCTGAATTATTTTGAAGATACATTGCAAAAAGTCGTCGCCCT 947
BSNT_02237___ 948 TGCGTTTTTCATGCCGATGGTGTCAGGGATGACAGGAAATACGGGAACAC 997
.||||||||||||||||||.|..|.||.|.|||.||.|||||.||.||||
RBAM_013120__ 948 CGCGTTTTTCATGCCGATGATTGCGGGAACGACGGGTAATACAGGCACAC 997
BSNT_02237___ 998 AATCTCTTGCGGTTGTCATCAGAGGTTTGTCTAAAGAAGAAATGAACAAA 1047
|.||.||.||.||.|||||||||||..||.||||||||||||||||.|||
RBAM_013120__ 998 AGTCACTCGCCGTCGTCATCAGAGGACTGGCTAAAGAAGAAATGAATAAA 1047
BSNT_02237___ 1048 AAAACGATTGTGCGCCTGATCTTCCGGGAGTTCAGAACAAGTATTTTTAT 1097
|||||.||..|....|||||.|||||.||..|.|||||..||||.|..||
RBAM_013120__ 1048 AAAACCATCTTTAAACTGATTTTCCGTGAACTAAGAACCGGTATCTACAT 1097
BSNT_02237___ 1098 CGG-AGCGGTTTGTTCTGTGC-----TGATTGCGATTGTCTCCATCATAT 1141
||| |.|| ||||||| .||||.||||||||.|.|.|.|.|
RBAM_013120__ 1098 CGGCATCG------TCTGTGCGATCGCGATTACGATTGTCGCAACCGTCT 1141
BSNT_02237___ 1142 GGCAGGGGAATG------CGCTTTTGGGATTTGTTGTCGCCTCTTCGCTG 1185
|||| |||.| ||| |.||.|||||.||||..||.||||||
RBAM_013120__ 1142 GGCA---GAAAGACTTAACGC---TCGGTTTTGTCGTCGGTTCATCGCTG 1185
BSNT_02237___ 1186 TTCTT--AACCTTAATCATCGGCACGATGTCAGGAACGATTATCCCTATT 1233
||| |||.||.||.|||||.||||||.|.||||||||..||||||||
RBAM_013120__ 1186 --CTTGCAACGTTGATTATCGGTACGATGGCCGGAACGATCGTCCCTATT 1233
BSNT_02237___ 1234 ATTTTGCACAAACTGAAAGTGGACCCGGCGATTGCTTCTGGACCGCTGAT 1283
|||.|.||.||||||||..|.||||||||||||||.||.|||||||||||
RBAM_013120__ 1234 ATTCTTCATAAACTGAACATTGACCCGGCGATTGCATCAGGACCGCTGAT 1283
BSNT_02237___ 1284 TACAACGTTAAACGATATTTTATCTTTATTAATCTACTTTGGCATTGCCA 1333
|||.|||.|.|||||||||||.||.||||||||.||.||.||||||||.|
RBAM_013120__ 1284 TACGACGCTGAACGATATTTTGTCCTTATTAATTTATTTCGGCATTGCAA 1333
BSNT_02237___ 1334 CTGCATTCATTCACTCATTATAA 1356
|||||||..||||..|.||||||
RBAM_013120__ 1334 CTGCATTTCTTCATGCTTTATAA 1356
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