Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02236 and RBAM_013110

See Amino acid alignment / Visit BSNT_02236 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence dna-align/BSNT_02236___ykzD.1.9828.seq
#    -bsequence dna-align/RBAM_013110___ykzD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02236___ykzD-RBAM_013110___ykzD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02236___ykzD-RBAM_013110___ykzD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02236___ykzD
# 2: RBAM_013110___ykzD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 147
# Identity:     105/147 (71.4%)
# Similarity:   105/147 (71.4%)
# Gaps:          18/147 (12.2%)
# Score: 363.0
# 
#
#=======================================

BSNT_02236___      1 ATGGAAAAGAAA---GAGGAGCAATACATCAATCAGGCTGAATATGTCCC     47
                     |||   ||||||   ||.|||||.||.|||||..|||||||.|||||.||
RBAM_013110__      1 ATG---AAGAAAAGGGAAGAGCAGTATATCAACGAGGCTGAGTATGTACC     47

BSNT_02236___     48 TCATCCGACGAAGGAAGGAGAGTATGC-CTTATTTCTTCATGAAACGTAT     96
                     .||||||||.||.|||||.|||||.|| ||.| |.||.||||||.|.|||
RBAM_013110__     48 GCATCCGACAAAAGAAGGGGAGTACGCGCTCA-TGCTGCATGAATCCTAT     96

BSNT_02236___     97 CATTTGCTTTCTGAAGATGACGAGACACAAACAA-----CAGAATAA    138
                     |||||.|||||.|||||.||.||     ||.|.|     |.||||||
RBAM_013110__     97 CATTTCCTTTCAGAAGAGGATGA-----AAGCGATTTGCCGGAATAA    138


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