Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02223 and RBAM_013070

See Amino acid alignment / Visit BSNT_02223 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence dna-align/BSNT_02223___ykoC.1.9828.seq
#    -bsequence dna-align/RBAM_013070___ykoC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02223___ykoC-RBAM_013070___ykoC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02223___ykoC-RBAM_013070___ykoC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02223___ykoC
# 2: RBAM_013070___ykoC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 799
# Identity:     552/799 (69.1%)
# Similarity:   552/799 (69.1%)
# Gaps:          71/799 ( 8.9%)
# Score: 1822.5
# 
#
#=======================================

BSNT_02223___      1 ATGAA----------GCAGCCGTTACATC--TCATTAATGCGACTGTGAA     38
                     |||||          |..||.|||| |||  |||.||           ||
RBAM_013070__      1 ATGAACTTGCGGCTGGAGGCTGTTA-ATCCGTCAATA-----------AA     38

BSNT_02223___     39 AGCGGCGGCGGTTTTTTGTTGTGTCGTCATGCTGTCGTTTATTTACAACC     88
                     .||||||||.||.||.|..||.|||.|.|||||||||||||||||.||.|
RBAM_013070__     39 GGCGGCGGCTGTATTGTTATGCGTCATAATGCTGTCGTTTATTTATAATC     88

BSNT_02223___     89 CTTACACCCCGGCATGTTTTTATATCATCATCATCGCGGGCGTTTTACTG    138
                     |.||||||||.||.|..||||||   ||||||||.|||||.|.|.|.||.
RBAM_013070__     89 CGTACACCCCTGCTTTGTTTTAT---ATCATCATTGCGGGAGGTGTCCTC    135

BSNT_02223___    139 GCGGCCGGAATC-----CCATTGAAAAAATGGTTGTTGTTTACGATTCCG    183
                     .||||.||  ||     ||..|||||||||||.||.||||.|||||||||
RBAM_013070__    136 TCGGCGGG--TCGTGTGCCGCTGAAAAAATGGCTGCTGTTCACGATTCCG    183

BSNT_02223___    184 TTTTTGATTTTAGCATTCGGGTGCGTGTGGACAGCCGCAGTTTTTGGAAA    233
                     |||.|.|||.|.||.|||||.|...|.|||||||||||.||.||.|||||
RBAM_013070__    184 TTTGTCATTCTGGCCTTCGGTTCTTTATGGACAGCCGCCGTATTCGGAAA    233

BSNT_02223___    234 GGTGCCGACAACACCGGA--TAATTTTTTGTTTCAAGC-AGGCCCTATCT    280
                     ..|.||||||  ||||||  .||..|..||||| |||| .||.||.||..
RBAM_013070__    234 CATCCCGACA--ACCGGAAGCAACCTGCTGTTT-AAGCTCGGGCCGATTG    280

BSNT_02223___    281 CCATTAACAGCGATAATGTGTCTGTCGGCATCTCCCTCGGGTTTCGTATT    330
                     ||.|.|||||.|||||.|.|.|..||||.||.||..|||.||||||||||
RBAM_013070__    281 CCGTCAACAGTGATAACGCGGCGCTCGGGATTTCTATCGCGTTTCGTATT    330

BSNT_02223___    331 TTATGCTTTTCCGCCTTATCGATGATGTTTGTTTTTACAACCGATCCGAT    380
                     |||||.||||||||.||.||||||||||||.||||.||||||||||||||
RBAM_013070__    331 TTATGTTTTTCCGCTTTGTCGATGATGTTTCTTTTCACAACCGATCCGAT    380

BSNT_02223___    381 TTTATTTATGCTGAGCCTTGTCCAGCAGTGCAGGCTCTCACCAAAGCTCG    430
                     |.|.||.|||||.||.||..|.||||||||.|.|||..|.||.|||||.|
RBAM_013070__    381 TCTGTTCATGCTCAGTCTGATTCAGCAGTGTAAGCTGCCGCCCAAGCTTG    430

BSNT_02223___    431 CGTACGGTGTCATCGCAGGCTTTCGCTTTCTTCCGCTGTTAAAGGATGAG    480
                     |.|||||.||.|||||.||.||.||.|||||.||.||..|.||.|||||.
RBAM_013070__    431 CATACGGCGTTATCGCGGGGTTCCGGTTTCTCCCTCTTCTGAAAGATGAA    480

BSNT_02223___    481 GTCCAGCTGATTCAGCAGGCTCATAAAATCAGAGGAGGAGCGGCGGAGAG    530
                     .|||.|.|.||.|.||||||.||.|.||||||.||.|..|||.|.||...
RBAM_013070__    481 ATCCTGATCATCCGGCAGGCGCACAGAATCAGGGGCGCGGCGTCTGATTC    530

BSNT_02223___    531 CGGCATCATTAATAAAA--TCGGTGCGTTAAAACGATATACCATACCGCT    578
                     |||..|.|  ||..|||  ||...||.||.|..||.|..|||||.|||||
RBAM_013070__    531 CGGGCTGA--AAGGAAAGCTCTCCGCCTTCAGGCGCTTCACCATTCCGCT    578

BSNT_02223___    579 ATTGGTAAGCGCCATCAGAAAAGCGGAACGGACAGCGCTTGCGATGGAAT    628
                     |||||.|.||||.||||||||.||||||||.||.|||.|.||||||||||
RBAM_013070__    579 ATTGGCAGGCGCAATCAGAAAGGCGGAACGCACGGCGATCGCGATGGAAT    628

BSNT_02223___    629 CGAAAGGATTTACAGGAAGCAGAAACCGGACATACTACAGGACATTGAGC    678
                     |.|||||.|||||.||.|||.|||||||.||.|..|||||.||..|.|.|
RBAM_013070__    629 CTAAAGGCTTTACGGGGAGCCGAAACCGCACGTTTTACAGAACTGTTACC    678

BSNT_02223___    679 GTGAACCGGCG-CGACTGGGTGTTCTTTTGC---CTCGTCCTCTTATTAT    724
                     |||..|| ||| ||||||   ||.|||||.|   |||||.||..|.||||
RBAM_013070__    679 GTGCGCC-GCGCCGACTG---GTGCTTTTTCCTGCTCGTGCTTCTGTTAT    724

BSNT_02223___    725 TC-------GCGGGATCCTTTC-TCGTATCTTTATGTTTCGCATCATAA    765
                     ||       ||.||.||.|||| |.||       ||||| |.||.|   
RBAM_013070__    725 TCGGCGCAAGCTGGCTCATTTCATTGT-------TGTTT-GTATAA---    762


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02223 and RBAM_013070

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
