Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02220 and RBAM_013050

See Amino acid alignment / Visit BSNT_02220 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence dna-align/BSNT_02220___ispA.1.9828.seq
#    -bsequence dna-align/RBAM_013050___ispA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02220___ispA-RBAM_013050___ispA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02220___ispA-RBAM_013050___ispA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02220___ispA
# 2: RBAM_013050___ispA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 965
# Identity:     763/965 (79.1%)
# Similarity:   763/965 (79.1%)
# Gaps:          10/965 ( 1.0%)
# Score: 2956.5
# 
#
#=======================================

BSNT_02220___      1 ATGAATGGTGAAATCCGCTTGATCCCGTATGTGACGAATGAGCAGATCAT     50
                     ||||||||||||||.|..|||||.||.|||||.|||.||||.||||||||
RBAM_013050__      1 ATGAATGGTGAAATGCATTTGATTCCTTATGTCACGGATGAACAGATCAT     50

BSNT_02220___     51 GGATGTAAACGAGCTTCCTGAGGGCATTAAAGTGATTAAGGCGCCAGAAA    100
                     ||||||.|||||||||||||||||.|||||||||||||||||||||||..
RBAM_013050__     51 GGATGTGAACGAGCTTCCTGAGGGGATTAAAGTGATTAAGGCGCCAGAGT    100

BSNT_02220___    101 TGTGGGCAAAAGGGGTAAAAGGCAAAAATATTAAAGTTGCTGTATTAGAC    150
                     ||||||||||||||.|.||||||||..||||||||.|.||.||..|.|||
RBAM_013050__    101 TGTGGGCAAAAGGGTTTAAAGGCAAGGATATTAAAATCGCGGTGCTTGAC    150

BSNT_02220___    151 ACGGGCTGCGACA-CAAGCCACCCTGATTTAAAAAATCAAATCATCGGCG    199
                     ||.|||||||||| ||| .||.||||||||.|||.|.|..||..||||||
RBAM_013050__    151 ACAGGCTGCGACATCAA-TCATCCTGATTTGAAAGACCGGATTGTCGGCG    199

BSNT_02220___    200 GAAAGAACTTCACGGATGACGACGGCGGCAAGGAAGATGCGATTTCCGAC    249
                     |.||.||||||||.|||||.|||||.|||||.|||||.|||||||||||.
RBAM_013050__    200 GGAAAAACTTCACCGATGATGACGGAGGCAAAGAAGACGCGATTTCCGAT    249

BSNT_02220___    250 TACAACGGACACGGCACACACGTCGCCGGAACGATTGCAGCTAATGATTC    299
                     ||.|||||||||||.||||||||..|||||||||||||.||.||||||||
RBAM_013050__    250 TATAACGGACACGGGACACACGTTTCCGGAACGATTGCCGCCAATGATTC    299

BSNT_02220___    300 AAACGGAGGCATTGCCGGAGTCGCGCCTGAGGCAAGCCTATTGATTGTGA    349
                     ||||||.||.|||.|.||.||.|||||.||.||||||||.||.||.||.|
RBAM_013050__    300 AAACGGCGGAATTTCGGGTGTTGCGCCGGAAGCAAGCCTTTTAATCGTTA    349

BSNT_02220___    350 AGGTTCTTGGCGGCGAGAATGGCAGCGGACAATACGAATGGATAATTAAC    399
                     |.|||||.|||||..|.||.||||||||..|||||||||||||.||||||
RBAM_013050__    350 AAGTTCTCGGCGGTCAAAACGGCAGCGGCAAATACGAATGGATCATTAAC    399

BSNT_02220___    400 GGCATCAACTACGCGGTGGAACAGAAAGTC-GACATCATCTCAATGTCCC    448
                     ||||||||||||||.||.||||| ||||.| ||.|||||.||.|||||.|
RBAM_013050__    400 GGCATCAACTACGCCGTTGAACA-AAAGGCAGATATCATTTCCATGTCAC    448

BSNT_02220___    449 TTGGAGGGCCAAGCGATGTGCCAGAGCTGGAAGAAGCAGTGAAAAACGCA    498
                     |.||.|||||||||||||||||.||..||.|||||||.||.|.|||.||.
RBAM_013050__    449 TCGGCGGGCCAAGCGATGTGCCTGAATTGAAAGAAGCCGTCACAAATGCG    498

BSNT_02220___    499 GTCAAAAACGGAGTGCTTGTCGTTTGTGCAGCGGGAAATGAAGGTGACGG    548
                     ||.||||.|||.||.||.||||||||.||.||.|||||.|||||.|||||
RBAM_013050__    499 GTAAAAAGCGGTGTTCTGGTCGTTTGCGCGGCAGGAAACGAAGGCGACGG    548

BSNT_02220___    549 CGACGAACGCACAGAAGAGCTTTCCTACCCCGCAGCTTATAATGAAGTGA    598
                     .|||||.||.|||||.||.||.||.||.||.||.|||||.||.|||||||
RBAM_013050__    549 AGACGAGCGTACAGAGGAACTGTCGTATCCGGCCGCTTACAACGAAGTGA    598

BSNT_02220___    599 TTGCAGTTGGATCTGTTTCTGTAGCGCGAGAATTATCAGAATTTTCTAAC    648
                     |.|||||.|||||.||.||..|.||.||..|||..||.||||||||.|||
RBAM_013050__    599 TCGCAGTCGGATCAGTCTCAATCGCTCGTAAATCGTCTGAATTTTCAAAC    648

BSNT_02220___    649 GCGAATAAAGAGATTGACCTTGTGGCACCAGGAGAAAACATCTTATCCAC    698
                     ||.|||||||||||||||||.|||||.||.||||||||.||..|.|||||
RBAM_013050__    649 GCAAATAAAGAGATTGACCTGGTGGCTCCGGGAGAAAATATTCTCTCCAC    698

BSNT_02220___    699 CCTTCCCAACAAGAAGTACGGTAAGCTGACCGGCACTTCAATGGCTGCCC    748
                     ||||||||||.|.||.|||||.||.|||||.||||||||||||||.||||
RBAM_013050__    699 CCTTCCCAACCATAAATACGGGAAACTGACGGGCACTTCAATGGCCGCCC    748

BSNT_02220___    749 CTCATGTCAGCGGTGCGCTTGCTTTAATCAAAA--GCTATGAAGAAGAAT    796
                     |.|||||.|||||.||||||||.||||| ||||  ||| ||||.|.||..
RBAM_013050__    749 CGCATGTGAGCGGAGCGCTTGCCTTAAT-AAAAGGGCT-TGAACAGGACG    796

BSNT_02220___    797 CATTTCAAAGAAAGCTTTCTGAATCTGAGGTTTTCGCACAGCTAATCCGC    846
                     |.|||||..|.|.|||||||||..||||.||.|.|||.|||||..|.||.
RBAM_013050__    797 CGTTTCAGCGGACGCTTTCTGAGGCTGAAGTCTACGCCCAGCTCGTGCGG    846

BSNT_02220___    847 AGGACACTTCCTCTTGATATTGCAAAAACGCTGGCAGGCAATGGATTCCT    896
                     .||||.||||||.|.||.||.||.|||||..||||.||.||.||.||.||
RBAM_013050__    847 CGGACCCTTCCTTTGGACATCGCCAAAACATTGGCCGGGAACGGGTTTCT    896

BSNT_02220___    897 GTATTTA-ACAGCTCCTGATGAGCTCGCAGAAAAAGCAGAGCAATCACAT    945
                     ||||||| || ||.|||||.|||||....||||.|||.||.||..||||.
RBAM_013050__    897 GTATTTAGAC-GCGCCTGAAGAGCTGATGGAAAGAGCCGAACAGGCACAG    945

BSNT_02220___    946 TTGTTGACCCTATAA    960
                     .||.||.|..|.|.|
RBAM_013050__    946 CTGCTGTCTTTCTGA    960


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02220 and RBAM_013050

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
