Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02210 and RBAM_012960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:54
# Commandline: needle
# -asequence dna-align/BSNT_02210___ykmA.1.9828.seq
# -bsequence dna-align/RBAM_012960___ohrR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02210___ykmA-RBAM_012960___ohrR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02210___ykmA-RBAM_012960___ohrR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02210___ykmA
# 2: RBAM_012960___ohrR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 542
# Identity: 315/542 (58.1%)
# Similarity: 315/542 (58.1%)
# Gaps: 130/542 (24.0%)
# Score: 1041.5
#
#
#=======================================
BSNT_02210___ 0 -------------------------------------------------- 0
RBAM_012960__ 1 ATGGACTGTTTTTCGGCTACAATAGGGGTAACGTTAACAAACAAAGAGTT 50
BSNT_02210___ 1 -------------ATG---GAAAATAAATTTGATCATATGAAATTGGAGA 34
||| |||||..|.|||||.|||||||||.||||||
RBAM_012960__ 51 GGTGAAAGAAGTAATGGCAGAAAAAGATTTTGAACATATGAAACTGGAGA 100
BSNT_02210___ 35 ATCAGCTTTGTTTTTTGCTATATGCGAGTTCGCGGGAAATGATAAAGCAA 84
|||||||||||||||||||.||.||.||.||..|.|||||||..||.|..
RBAM_012960__ 101 ATCAGCTTTGTTTTTTGCTGTACGCAAGCTCAAGAGAAATGACGAAACGG 150
BSNT_02210___ 85 TACAAGCCTCTGCTTGATAAGCTGAATATAACATACCCCCAATATTTGGC 134
|||||.||.||||||||||||||.||..||||.||.||||||||||||||
RBAM_012960__ 151 TACAAACCGCTGCTTGATAAGCTCAACGTAACTTATCCCCAATATTTGGC 200
BSNT_02210___ 135 TTTGCTTTTGTTATGGGAACACGAAACGCTTACTGTCAAAAAAATGGGCG 184
..|||||||.||||||||.||||||...||.|.|||.|||...|||||.|
RBAM_012960__ 201 GCTGCTTTTATTATGGGAGCACGAAGAACTGAATGTGAAACGGATGGGTG 250
BSNT_02210___ 185 AACAGCTGTATTTAGATTCAGGAACGCTCACTCCTATGCTTAAACGAATG 234
|.|...||||..|.|||||.||||||||.||.||.|||||.|||||.|||
RBAM_012960__ 251 AGCTTTTGTACCTGGATTCCGGAACGCTGACACCGATGCTGAAACGGATG 300
BSNT_02210___ 235 GAACAACAGGGTTTGATTACGAGAAAAAGATCAGAAGAGGATGAGCGGTC 284
||.||.||.||..|.||.|.||||||..|.||.|..||.||.|||||.||
RBAM_012960__ 301 GAGCAGCACGGAATCATCATGAGAAAGCGGTCGGCTGAAGACGAGCGATC 350
BSNT_02210___ 285 CGTGTTGATCAGCCTGACAG----AGGACGGAGCGTTATTAAAGGATAAA 330
||||..||||||.||.|||| |||||||..| ||..||.|.|.|
RBAM_012960__ 351 CGTGACGATCAGGCTCACAGATGAAGGACGGGCC----TTGCAGAAGACA 396
BSNT_02210___ 331 GCGGTTGACATTCC---------------AGAGACAATTCTGGGGCTCTC 365
||||..||.||.|| |.|||| |||.|..||
RBAM_012960__ 397 GCGGCGGATATCCCCATTGCCATGCTGGAACAGAC------GGGACGGTC 440
BSNT_02210___ 366 AAAGCAGTCTGGGGAGGATCTCAAACAGTTAAA--ATCCGCTCTAT---- 409
||| .|||||..|.||.|||||||| |..||||.|||
RBAM_012960__ 441 AAA---------AGAGGAATTAAAGCAGTTAAAGCAGTCGCTTTATGAGG 481
BSNT_02210___ 410 ------ATACATTGCTGGAAACACTTCATCAAAAA-AATTGA 444
|||| |||| |||..|| ||||| ||
RBAM_012960__ 482 TTTTGAATAC---GCTG----CACGGCA--AAAAATAA---- 510
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