Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02203 and RBAM_012910

See Amino acid alignment / Visit BSNT_02203 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence dna-align/BSNT_02203___ykkD.1.9828.seq
#    -bsequence dna-align/RBAM_012910___ykkD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02203___ykkD-RBAM_012910___ykkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02203___ykkD-RBAM_012910___ykkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02203___ykkD
# 2: RBAM_012910___ykkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 323
# Identity:     231/323 (71.5%)
# Similarity:   231/323 (71.5%)
# Gaps:          13/323 ( 4.0%)
# Score: 777.0
# 
#
#=======================================

BSNT_02203___      1 ATGCTGCACTGGATCAG-TTTATTGTGCGCGGG-CTGTTTAGAAATGGCC     48
                        .||||.|||||||| .|.||.| .|||||| || ||..||||||..|
RBAM_012910__      1 ---ATGCATTGGATCAGCCTGATAG-CCGCGGGTCT-TTGTGAAATGCTC     45

BSNT_02203___     49 GGCGTGGCCCTT---ATGAATCAATATGCGAAAGAAAAAAGCGTGAAATG     95
                     ||   ||.|.||   ||||||||||.|...||||||||.|..||.|||||
RBAM_012910__     46 GG---GGTCATTTTAATGAATCAATTTCAAAAAGAAAAGAAAGTCAAATG     92

BSNT_02203___     96 GGTGCTGTTGATCATTGTTGGTTTTGCCGCTTCATTTTCCTTGCTGTCGT    145
                     |.|.||.||.||.||.|..||.|||||.|||||.||||||.||||.||.|
RBAM_012910__     93 GATTCTTTTCATTATCGCCGGATTTGCGGCTTCTTTTTCCCTGCTTTCTT    142

BSNT_02203___    146 ACGCAATGGAAACCATTCCGATGGGAACGGCTTACGCCGTCTGGACAGGA    195
                     |.||.|||||.||.||..|||||||.|||||.||.||..|||||||.||.
RBAM_012910__    143 ATGCGATGGAGACGATCGCGATGGGCACGGCCTATGCGATCTGGACCGGT    192

BSNT_02203___    196 ATTGGCACCGCCGGCGGGGCGCTTGTCGGCATCCTCTTTTACAAGGAGCA    245
                     ||.|||||.||.|||||.||..|.|.||||||.||.||.|||...|||||
RBAM_012910__    193 ATCGGCACGGCGGGCGGCGCATTAGCCGGCATTCTTTTCTACGGCGAGCA    242

BSNT_02203___    246 GAAAGACGCCAAACGGATCTTCTTTATCGCGTTGATTTTATGCTCAGCGG    295
                     |||.||.||.||.||.|||||.||.||.|||.|.|||||||||.|.||.|
RBAM_012910__    243 GAAGGATGCGAAGCGCATCTTTTTCATTGCGCTTATTTTATGCGCTGCCG    292

BSNT_02203___    296 TTGGTTTGAAAATTCTGTCATAA    318
                     |.||..||||||||||.||.|||
RBAM_012910__    293 TAGGGCTGAAAATTCTTTCGTAA    315


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.