Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02201 and RBAM_012900

See Amino acid alignment / Visit BSNT_02201 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_02201___ykkC.1.9828.seq
#    -bsequence dna-align/RBAM_012900___ykkC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02201___ykkC-RBAM_012900___ykkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02201___ykkC-RBAM_012900___ykkC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02201___ykkC
# 2: RBAM_012900___ykkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 353
# Identity:     247/353 (70.0%)
# Similarity:   247/353 (70.0%)
# Gaps:          28/353 ( 7.9%)
# Score: 842.5
# 
#
#=======================================

BSNT_02201___      1 ATGAAATGGGGATTGGTCGTGCTTGCCGCTGTTTTCGAGGTTGTTTGGGT     50
                     |||||||||||.||.||.||..|.||.||.||.||.||.||.||.|||||
RBAM_012900__      1 ATGAAATGGGGTTTAGTGGTCATAGCGGCCGTATTTGAAGTGGTATGGGT     50

BSNT_02201___     51 GATAGGCTTAAAGCACGCTGACTCAGCCTTAACATGGAGCGGCAC---TG     97
                     .|..|||.|.||.||.|||||.||.||..|..|.|||||||||||   ||
RBAM_012900__     51 CACCGGCCTGAAACATGCTGATTCGGCACTGGCGTGGAGCGGCACGATTG    100

BSNT_02201___     98 CCATCGGCATCATATTCAGTTTTTATCTTCTAATAAAGGCGACTCACAGT    147
                        |.||.|||||..|||||||||||||..||||.||||||||..||||.
RBAM_012900__    101 ---TGGGAATCATCGTCAGTTTTTATCTATTAATCAAGGCGACAGACAGC    147

BSNT_02201___    148 CTGCCTGTTGGTACCGTGTATGCCGTCTTTAGCGGGCTCGGCACAGCGGG    197
                     |||||.||.||.||.||.|||||.|||||||.|||.|||||.||||||||
RBAM_012900__    148 CTGCCCGTAGGAACGGTATATGCGGTCTTTACCGGACTCGGGACAGCGGG    197

BSNT_02201___    198 AACAGTACTTAGTGAAATCGTTCTGTTTCA----------TGAACCGGTT    237
                     .||.||.||.|||||||||.|.|| |||||          .||.||||| 
RBAM_012900__    198 CACCGTGCTCAGTGAAATCCTGCT-TTTCAAAGAGCAAGCCGATCCGGT-    245

BSNT_02201___    238 GGATGGCCGAAGCTATTGTTAATTGGCGTGCTCTTAATCGGTGTAATCGG    287
                             |||..|..||.|.||.|||||..|..|.||||||||.|||||
RBAM_012900__    246 --------GAAAATCGTGCTGATCGGCGTTTTGCTGATCGGTGTCATCGG    287

BSNT_02201___    288 GTTGAAGCTTGTGACACAGGATGAGACAGAGGAAAAAGGAGGCG-AGGCA    336
                     .||.|||||.||.|||||||||.||.|.|| ||..|||||||.| ||||.
RBAM_012900__    288 ATTAAAGCTGGTCACACAGGATAAGCCTGA-GACGAAGGAGGAGAAGGCG    336

BSNT_02201___    337 TAA    339
                     |||
RBAM_012900__    337 TAA    339


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