Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02195 and RBAM_012880

See Amino acid alignment / Visit BSNT_02195 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_02195___ykhA.1.9828.seq
#    -bsequence dna-align/RBAM_012880___ykhA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02195___ykhA-RBAM_012880___ykhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02195___ykhA-RBAM_012880___ykhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02195___ykhA
# 2: RBAM_012880___ykhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 519
# Identity:     414/519 (79.8%)
# Similarity:   414/519 (79.8%)
# Gaps:           0/519 ( 0.0%)
# Score: 1650.0
# 
#
#=======================================

BSNT_02195___      1 ATGGAAACACCGGAAACAAGATTTTGTAAAGAGTCAAAGGTTGTGAAAAC     50
                     |||.|....||.|||.||||||||||.|||||..|||.||||||.|||||
RBAM_012880__      1 ATGAAGTTGCCAGAATCAAGATTTTGCAAAGAAACAAGGGTTGTTAAAAC     50

BSNT_02195___     51 CAGCAGGGTGTTCCCGCTTGACACGAACAACCATAATACGCTGTTTGGCG    100
                     .||||||||.||.||||||||.|||||.||.||.||||||||||||||||
RBAM_012880__     51 AAGCAGGGTTTTTCCGCTTGATACGAATAATCACAATACGCTGTTTGGCG    100

BSNT_02195___    101 GAAAATTAATGAGCTACATCGATGACATTGCCTCTATTTCCGCGGCGCGC    150
                     ||||..|.|||||||||||.|||||.||.||.||.|||||||||||.|||
RBAM_012880__    101 GAAAGCTGATGAGCTACATTGATGATATCGCTTCAATTTCCGCGGCCCGC    150

BSNT_02195___    151 CATTGCAGACGTGAAACCGTAACGGCTTCAATGGATTCTGTAGATTTTTT    200
                     ||.|||.|..|||||||.||.|||||.||||||||||||||.||||||||
RBAM_012880__    151 CACTGCCGGTGTGAAACAGTCACGGCCTCAATGGATTCTGTGGATTTTTT    200

BSNT_02195___    201 AAAGCCGATCGGGCAAAAGGATTCTGTCTGCCTAGAGTCCTATGTGACAT    250
                     ....||.|||||.|||.|||||||.||.|||||.||.||.||.||.||||
RBAM_012880__    201 GCGCCCCATCGGCCAACAGGATTCCGTATGCCTTGAATCTTACGTCACAT    250

BSNT_02195___    251 GGGTCGGCACATCTTCTATGGAAGTATTTGTGAAAGTCATTAAGGAGCAT    300
                     |||||||||||||.||||||||.||.|||||.|||||||||||.||.|||
RBAM_012880__    251 GGGTCGGCACATCGTCTATGGAGGTGTTTGTCAAAGTCATTAAAGAACAT    300

BSNT_02195___    301 TTGATGACTGGCGAACGGGAACTCGCTGCCACATCCTTTTTGACATTTGT    350
                     .|||||||.||||||||.||.||.||.||.||.||.|||.||||.|||||
RBAM_012880__    301 CTGATGACGGGCGAACGCGAGCTTGCGGCAACGTCGTTTCTGACCTTTGT    350

BSNT_02195___    351 CGCATTAGATTCAAATGGCAAGCCGGTGCCTGTACCGAGGGTTGTACCGG    400
                     |||..|.||||||||.||.||..||||.||.||.|||.||.|.||.||||
RBAM_012880__    351 CGCGCTTGATTCAAACGGGAAATCGGTACCCGTTCCGCGGATCGTGCCGG    400

BSNT_02195___    401 AAACAGAAGAAGAAATCATGCTTCATAATACAGCAGTACAGCGCGCTAAT    450
                     ||||.||.|||||||||||||||||.|||||.||.||.||||||||....
RBAM_012880__    401 AAACCGAGGAAGAAATCATGCTTCACAATACGGCCGTTCAGCGCGCCGGA    450

BSNT_02195___    451 GAACGAAAGAACCGCAAGAAGCACAGCCAGGCGCTTGCAAATGCGCTCGG    500
                     ||||||||.||||||...||.||||||.||||.||.||..|.||||||||
RBAM_012880__    451 GAACGAAAAAACCGCTTAAAACACAGCAAGGCCCTGGCCGAGGCGCTCGG    500

BSNT_02195___    501 AACTGATAAGCCTTGGTGA    519
                     |||.|||||.|||||||.|
RBAM_012880__    501 AACAGATAAACCTTGGTAA    519


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