Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02190 and RBAM_012850
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_02190___ykfD.1.9828.seq
# -bsequence dna-align/RBAM_012850___ykfD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02190___ykfD-RBAM_012850___ykfD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02190___ykfD-RBAM_012850___ykfD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02190___ykfD
# 2: RBAM_012850___ykfD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity: 743/1039 (71.5%)
# Similarity: 743/1039 (71.5%)
# Gaps: 116/1039 (11.2%)
# Score: 2683.0
#
#
#=======================================
BSNT_02190___ 1 ATGACG------CCACTGCCTTTGTTAGAGGTCAGCCAGCTAAAAATGCA 44
|||||| ||.|| |||| ||.||||||..|||.||||||||
RBAM_012850__ 1 ATGACGGCATCTCCGCT-CCTT-----GAAGTCAGCGGGCTGAAAATGCA 44
BSNT_02190___ 45 TTTTGACGCAGGGAA-----AAAGCGGACAGTCAAAGCCGTCGACGGGGT 89
||||||||| ||||| |||| |.||.|||||.||||||||.||
RBAM_012850__ 45 TTTTGACGC-GGGAAGAAAGAAAG----CCGTAAAAGCAGTCGACGGTGT 89
BSNT_02190___ 90 CACCTTTCAGATTCGTGA----AGGAGAAACGTTCGGGCTAGTCGGGGAA 135
||.||||||.||| | |||.|||||.|||||.||.|||||.|||
RBAM_012850__ 90 CAGCTTTCACATT----AACAGAGGGGAAACATTCGGACTCGTCGGAGAA 135
BSNT_02190___ 136 TCAGGGTGCGGGAAATCAACCTTGGGGAGAGTGCTGATGCGCCTTTATCA 185
||.||.|||||.|||||.||..|.||.||.||..|..|.||.||.|||.|
RBAM_012850__ 136 TCGGGATGCGGTAAATCGACGCTCGGAAGGGTTATTCTCCGTCTGTATGA 185
BSNT_02190___ 186 GCCGAC------------------AGAAGGAAGCGTGACATA-------C 210
.||||| .|||||.| || ||.||| |
RBAM_012850__ 186 CCCGACGGCCGGTTCAGTATCATATGAAGGGA-CG-GATATACACCGTGC 233
BSNT_02190___ 211 CGCGGCACAAATCTTCATGCGCTGAGTGAAAAAGAGCAGTTTGCCTTCAA 260
|||||| |.||.|||.||..|.||||..
RBAM_012850__ 234 CGCGGC-----------------------AGAACAGCGGTCGGTCTTCTT 260
BSNT_02190___ 261 CCGCAAACTGCAGATGATTTTTCAGGACCCCTATGCTTCACTTAACCCGC 310
||||||.||||||||||||||.||.|||||.||.||.||..|.||.||||
RBAM_012850__ 261 CCGCAAGCTGCAGATGATTTTCCAAGACCCTTACGCCTCGTTAAATCCGC 310
BSNT_02190___ 311 GCATGACCGTTCGAGAAATTATTTTGGAGCCGATGGAGATTCACAATCTC 360
||.|||||||..|.|||||||||.|||||||||||||.||.||||||||.
RBAM_012850__ 311 GCCTGACCGTAAGGGAAATTATTATGGAGCCGATGGAAATCCACAATCTT 360
BSNT_02190___ 361 TACAATACCCATAAAGCGCGGCTTCTCGTCGTGGACGAGCTGCTTGAGGC 410
||||||||....|||||.||.||..|..|.|.|||.||.||||||||.||
RBAM_012850__ 361 TACAATACAAGAAAAGCCCGTCTAATGATGGCGGATGAACTGCTTGAAGC 410
BSNT_02190___ 411 AGTTGGGCTTCATCCCGATTTTGGCAGCCGTTATCCGCATGAATTCAGCG 460
.||.|||||.|||||.|||||.||||||||.|||||.||.||||||||||
RBAM_012850__ 411 TGTCGGGCTCCATCCGGATTTCGGCAGCCGGTATCCCCACGAATTCAGCG 460
BSNT_02190___ 461 GCGGGCAAAGGCAGAGAATCGGGATTGCCAGAGCACTGTCGCTGAATCCT 510
||||.||.||||||||||||||||||||||||||.||.||.|||.||||.
RBAM_012850__ 461 GCGGACAGAGGCAGAGAATCGGGATTGCCAGAGCGCTCTCTCTGCATCCC 510
BSNT_02190___ 511 GAATTTATCGTGGCGGACGAACCGATTTCTGCACTTGATGTCTCTGTTCA 560
|||||||||||||||||.||.||||||||.||.||.|||||.||.||.||
RBAM_012850__ 511 GAATTTATCGTGGCGGATGAGCCGATTTCCGCGCTGGATGTGTCGGTACA 560
BSNT_02190___ 561 AGCGCAGGTGGTCAACCTGCTGAAGCGGCTTCAAAAAGAGAAAGGGCTAA 610
.||.|||||.||||||||.||.||..|||||||.||||||||||||||.|
RBAM_012850__ 561 GGCTCAGGTCGTCAACCTTCTAAAAAGGCTTCAGAAAGAGAAAGGGCTGA 610
BSNT_02190___ 611 CGTTTTTATTCATTGCCCATGATCTTTCGATGGTGAAGCATATCAGTGAC 660
|.||||||||.||.|||||.|||.|.||.|||||.|||||||||||.|||
RBAM_012850__ 611 CATTTTTATTTATCGCCCACGATTTATCAATGGTCAAGCATATCAGCGAC 660
BSNT_02190___ 661 AGGATCGGTGTCATGTACTTAGGGCACATGATGGAAATTACAGAGAGCG- 709
.|||||||.||.|||||.||.||.|.||||||||||||||||||.||||
RBAM_012850__ 661 CGGATCGGCGTGATGTATTTGGGCCGCATGATGGAAATTACAGAAAGCGC 710
BSNT_02190___ 710 -GCACCTTGTATCGTGAACCGCTCCATCCCTATACAAAGGCGCTTTTGTC 758
||.| |.||.||.||||||||.||.||.|||||.|||||||||||.||
RBAM_012850__ 711 TGCGC--TTTACCGGGAACCGCTTCACCCTTATACGAAGGCGCTTTTATC 758
BSNT_02190___ 759 CTCGATTCCCATTCCAGATCCTGAAT-TGGAGGACAAGCGTGAGCGTATT 807
|||.||.||.|||||.||||| |..| |.||||||||||||||.||.|||
RBAM_012850__ 759 CTCAATCCCGATTCCTGATCC-GCTTCTTGAGGACAAGCGTGAACGGATT 807
BSNT_02190___ 808 CTCTTAAAAGGAGAGCTGCCGAGCCCGGTCAATCCGCCAAGCGGCTGCGT 857
.|..|.|||||.||||||||||||||..|.||.|||||.||||||||.||
RBAM_012850__ 808 ATTCTGAAAGGGGAGCTGCCGAGCCCCCTTAACCCGCCGAGCGGCTGTGT 857
BSNT_02190___ 858 GTTTCGGACCCGCTGTCCGGAGGCGATGCCTGA-ATGTGGGG---AATCC 903
.||..||||.||.|||||.||.|||||| || .|.||.|| .||..
RBAM_012850__ 858 ATTCAGGACGCGGTGTCCTGAAGCGATG---GAGCTCTGCGGTAAGATAA 904
BSNT_02190___ 904 CGTCCCCAGCTTCAAGAAATCGAA-CCCGGCCGTTTTGTCGCTTGCCATC 952
|| ||..|||||.|||||.| ||| .|.||.|||||||||||.||||||.
RBAM_012850__ 905 CG-CCTGAGCTTGAAGAAGT-GAAGGCGGGGCGTTTTGTCGCCTGCCATT 952
BSNT_02190___ 953 TGTATCGAAATGCTGAAACGAAGGAAAAAG-TGAGATAA 990
|.|| |.||| ||| |||| |||
RBAM_012850__ 953 TATA-CAAAA----------AAG---AAAGCTGA----- 972
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