Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02189 and RBAM_012840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_02189___ykfC.1.9828.seq
# -bsequence dna-align/RBAM_012840___ykfC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02189___ykfC-RBAM_012840___ykfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02189___ykfC-RBAM_012840___ykfC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02189___ykfC
# 2: RBAM_012840___ykfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 960
# Identity: 607/960 (63.2%)
# Similarity: 607/960 (63.2%)
# Gaps: 129/960 (13.4%)
# Score: 1693.5
#
#
#=======================================
BSNT_02189___ 1 ATGA-TGCACACTGTCATATCAGCAGTGGCCAACATCTGGACAGC-GCC- 47
|||| .||| .|.||.|.|.|.||||..||||||.|.||||| || |||
RBAM_012840__ 1 ATGAGAGCA-GCCGTTACAGCGGCAGCAGCCAACGTATGGAC-GCTGCCG 48
BSNT_02189___ 48 TGATTCACCGCGCCCGTCTGAT----CAATTCATGCTTCAA---CCGACT 90
|.| ||.||.||..|||.|||| | .||||||.|| ||| |.
RBAM_012840__ 49 TCA-TCTCCCCGTTCGTATGATGCGCC----GATGCTTGAAAACCCG-CC 92
BSNT_02189___ 91 GTAATGATCAGAGACTGGCTGGAGCG--CATGACGTATGATGAAAGGCTT 138
|.| |||||||.|.|||.| |||| .|||...|||||.||..||||.
RBAM_012840__ 93 GCA--GATCAGAAAATGGTT--AGCGTCTATGGGATATGAAGAGCGGCTG 138
BSNT_02189___ 139 GGATTATGTACAGACAATGTAATCCAAACTCAGGTTCTCTTTGGCGAAAA 188
..||||||.||||||||..|..|||||||.||.|..||.||.||.|||.|
RBAM_012840__ 139 CAATTATGCACAGACAACCTTGTCCAAACGCAAGCGCTTTTCGGGGAAGA 188
BSNT_02189___ 189 GGT----ACTTGTGACAGCGGAACAGGAGGAATGGGTTTCTGTGATCGTG 234
.|| | ||.|.|.||.|||| |.||||||||.||.|||...|||.
RBAM_012840__ 189 AGTGATCA-TTCTCAAAGAGGAA---GGGGAATGGGCTTTTGTCGCCGTT 234
BSNT_02189___ 235 CCTAGCCAGCCATCCCGAAAGGATCCGCGCGGATACCCGGGCTGGATGAA 284
||..|||||||.||....||||||..|||||||||.|||||.||||||||
RBAM_012840__ 235 CCCGGCCAGCCTTCAAACAAGGATGTGCGCGGATATCCGGGGTGGATGAA 284
BSNT_02189___ 285 AAAGAACCAGCTGGCAAAA----TCTATGCCCATCCA--TTCACAACACG 328
|||.|.||||||..||||| .||.| |||.|| |||.|....||
RBAM_012840__ 285 AAAAAGCCAGCTTTCAAAAGACGGCTTT---CATACATCTTCCCCCGCCG 331
BSNT_02189___ 329 -ATGTGATGATCAGCAAACCTGCTGCCTTTTTGTACAAAAGCAATGAAGA 377
||| |||.|.||||||..|.||.|||||.||..|.|..||||..||
RBAM_012840__ 332 TATG----GATTACCAAACCGACAGCTTTTTTATATCACACAAATGGCGA 377
BSNT_02189___ 378 AAAGGAGATCGAATTGAGCTTTTTGACAGTTCTCCCCCT----CATTGCA 423
|...||..|.|||.|.||.||.||.||...||| | ||| ||
RBAM_012840__ 378 ACCAGACTTGGAAGTAAGTTTCTTAACGCGTCT-----TTCGGCAT--CA 420
BSNT_02189___ 424 GAA---GAAAACGGATATTTTAAGGTTTCGACTGTTTTGGGAGATAGGTT 470
|.| ||.||.||.|.|||...|||...|||.....|.|||||.|||||
RBAM_012840__ 421 GGACGTGAGAAAGGCTTTTTCCGGGTGGTGACGCCGCTCGGAGAAAGGTT 470
BSNT_02189___ 471 TG----TGAAGCAAAGTGATGC-----AGTGCCTGTCAGCAAACAGAA-- 509
.| |||||| |||.|| ||||| |.|||.||.|||
RBAM_012840__ 471 CGTAAATGAAGC----TGACGCAGACGAGTGC----CGGCATACGGAAGG 512
BSNT_02189___ 510 AGGGACTGCTGAAGACATCATTCAAACGGGAGCTT--TTTTTCTCGGACT 557
|.||.|.||.||.| ||||..|||||| ||.| |.||||||||.||
RBAM_012840__ 513 ACGGGCGGCCGATG---TCATCGAAACGG--GCATGATGTTTCTCGGGCT 557
BSNT_02189___ 558 TCCCTACCTATGGGGAGGGATCAGCGGGTTTGGGTTTGATTGCTCCGGTT 607
|||.||..||||||||||..|.|||||.||.||||||||.||.|||||.|
RBAM_012840__ 558 TCCGTATTTATGGGGAGGACTGAGCGGTTTCGGGTTTGACTGTTCCGGGT 607
BSNT_02189___ 608 TTATGTACAGTATATTTAAGGCGAATGGATACAGCATCCCCCGTGATGCG 657
|||||||....||||||||.||.||.||.||.|.|.|.|||||||||||.
RBAM_012840__ 608 TTATGTATTCGATATTTAAAGCAAACGGCTATACCCTTCCCCGTGATGCA 657
BSNT_02189___ 658 GGAGATCAGGCTAAGGC--GGGGAAGGGTGTCCCGCTTGATGATATGAAA 705
...||.||.||.||.|| ||.|.||.|.| .||.|..|.||||| ...
RBAM_012840__ 658 AAGGACCAAGCAAAAGCCGGGTGCAGCGCG--GCGGTAAACGATAT-CCT 704
BSNT_02189___ 706 GCCGG-TGATCTGCTGTTTTTTGCTTATGAGGAAGGAAAAGGAGCGATTC 754
||||| |||.||..|||||||.||.|||||.|||||||||||.|||||.|
RBAM_012840__ 705 GCCGGCTGACCTTTTGTTTTTCGCCTATGAAGAAGGAAAAGGCGCGATCC 754
BSNT_02189___ 755 ATCACGTCGGT------CTGTATGTAGGCGGCGGGAAAATGCTGCATTCT 798
|.||.|||||| ||| |.||.||||.| |||||||||.||.
RBAM_012840__ 755 ACCATGTCGGTTTGGCGCTG---GGAGACGGCCG---AATGCTGCACTCC 798
BSNT_02189___ 799 CCAAAGACAGGAAAATCAATTGAAATCCTTACATTAAAAGACATAATCTA 848
||.||.||.||||||.||||.|||.|.||..|.||..|||..|...||||
RBAM_012840__ 799 CCGAAAACGGGAAAAACAATCGAAGTGCTGTCTTTGGAAGGAACCGTCTA 848
BSNT_02189___ 849 TGAAAAAGAACTTTGTGCGGTGCGCCGCTGTTTTTCAGAATAA------- 891
||||||||||.|.||..|.||.||||||||| ||||
RBAM_012840__ 849 TGAAAAAGAATTATGCACCGTACGCCGCTGT--------ATAAGCGAAAA 890
BSNT_02189___ 891 ---------- 891
RBAM_012840__ 891 GGGGGAATAG 900
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