Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02189 and RBAM_012840

See Amino acid alignment / Visit BSNT_02189 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_02189___ykfC.1.9828.seq
#    -bsequence dna-align/RBAM_012840___ykfC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02189___ykfC-RBAM_012840___ykfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02189___ykfC-RBAM_012840___ykfC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02189___ykfC
# 2: RBAM_012840___ykfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 960
# Identity:     607/960 (63.2%)
# Similarity:   607/960 (63.2%)
# Gaps:         129/960 (13.4%)
# Score: 1693.5
# 
#
#=======================================

BSNT_02189___      1 ATGA-TGCACACTGTCATATCAGCAGTGGCCAACATCTGGACAGC-GCC-     47
                     |||| .||| .|.||.|.|.|.||||..||||||.|.||||| || ||| 
RBAM_012840__      1 ATGAGAGCA-GCCGTTACAGCGGCAGCAGCCAACGTATGGAC-GCTGCCG     48

BSNT_02189___     48 TGATTCACCGCGCCCGTCTGAT----CAATTCATGCTTCAA---CCGACT     90
                     |.| ||.||.||..|||.||||    |    .||||||.||   ||| |.
RBAM_012840__     49 TCA-TCTCCCCGTTCGTATGATGCGCC----GATGCTTGAAAACCCG-CC     92

BSNT_02189___     91 GTAATGATCAGAGACTGGCTGGAGCG--CATGACGTATGATGAAAGGCTT    138
                     |.|  |||||||.|.|||.|  ||||  .|||...|||||.||..||||.
RBAM_012840__     93 GCA--GATCAGAAAATGGTT--AGCGTCTATGGGATATGAAGAGCGGCTG    138

BSNT_02189___    139 GGATTATGTACAGACAATGTAATCCAAACTCAGGTTCTCTTTGGCGAAAA    188
                     ..||||||.||||||||..|..|||||||.||.|..||.||.||.|||.|
RBAM_012840__    139 CAATTATGCACAGACAACCTTGTCCAAACGCAAGCGCTTTTCGGGGAAGA    188

BSNT_02189___    189 GGT----ACTTGTGACAGCGGAACAGGAGGAATGGGTTTCTGTGATCGTG    234
                     .||    | ||.|.|.||.||||   |.||||||||.||.|||...|||.
RBAM_012840__    189 AGTGATCA-TTCTCAAAGAGGAA---GGGGAATGGGCTTTTGTCGCCGTT    234

BSNT_02189___    235 CCTAGCCAGCCATCCCGAAAGGATCCGCGCGGATACCCGGGCTGGATGAA    284
                     ||..|||||||.||....||||||..|||||||||.|||||.||||||||
RBAM_012840__    235 CCCGGCCAGCCTTCAAACAAGGATGTGCGCGGATATCCGGGGTGGATGAA    284

BSNT_02189___    285 AAAGAACCAGCTGGCAAAA----TCTATGCCCATCCA--TTCACAACACG    328
                     |||.|.||||||..|||||    .||.|   |||.||  |||.|....||
RBAM_012840__    285 AAAAAGCCAGCTTTCAAAAGACGGCTTT---CATACATCTTCCCCCGCCG    331

BSNT_02189___    329 -ATGTGATGATCAGCAAACCTGCTGCCTTTTTGTACAAAAGCAATGAAGA    377
                      |||    |||.|.||||||..|.||.|||||.||..|.|..||||..||
RBAM_012840__    332 TATG----GATTACCAAACCGACAGCTTTTTTATATCACACAAATGGCGA    377

BSNT_02189___    378 AAAGGAGATCGAATTGAGCTTTTTGACAGTTCTCCCCCT----CATTGCA    423
                     |...||..|.|||.|.||.||.||.||...|||     |    |||  ||
RBAM_012840__    378 ACCAGACTTGGAAGTAAGTTTCTTAACGCGTCT-----TTCGGCAT--CA    420

BSNT_02189___    424 GAA---GAAAACGGATATTTTAAGGTTTCGACTGTTTTGGGAGATAGGTT    470
                     |.|   ||.||.||.|.|||...|||...|||.....|.|||||.|||||
RBAM_012840__    421 GGACGTGAGAAAGGCTTTTTCCGGGTGGTGACGCCGCTCGGAGAAAGGTT    470

BSNT_02189___    471 TG----TGAAGCAAAGTGATGC-----AGTGCCTGTCAGCAAACAGAA--    509
                     .|    ||||||    |||.||     |||||    |.|||.||.|||  
RBAM_012840__    471 CGTAAATGAAGC----TGACGCAGACGAGTGC----CGGCATACGGAAGG    512

BSNT_02189___    510 AGGGACTGCTGAAGACATCATTCAAACGGGAGCTT--TTTTTCTCGGACT    557
                     |.||.|.||.||.|   ||||..||||||  ||.|  |.||||||||.||
RBAM_012840__    513 ACGGGCGGCCGATG---TCATCGAAACGG--GCATGATGTTTCTCGGGCT    557

BSNT_02189___    558 TCCCTACCTATGGGGAGGGATCAGCGGGTTTGGGTTTGATTGCTCCGGTT    607
                     |||.||..||||||||||..|.|||||.||.||||||||.||.|||||.|
RBAM_012840__    558 TCCGTATTTATGGGGAGGACTGAGCGGTTTCGGGTTTGACTGTTCCGGGT    607

BSNT_02189___    608 TTATGTACAGTATATTTAAGGCGAATGGATACAGCATCCCCCGTGATGCG    657
                     |||||||....||||||||.||.||.||.||.|.|.|.|||||||||||.
RBAM_012840__    608 TTATGTATTCGATATTTAAAGCAAACGGCTATACCCTTCCCCGTGATGCA    657

BSNT_02189___    658 GGAGATCAGGCTAAGGC--GGGGAAGGGTGTCCCGCTTGATGATATGAAA    705
                     ...||.||.||.||.||  ||.|.||.|.|  .||.|..|.||||| ...
RBAM_012840__    658 AAGGACCAAGCAAAAGCCGGGTGCAGCGCG--GCGGTAAACGATAT-CCT    704

BSNT_02189___    706 GCCGG-TGATCTGCTGTTTTTTGCTTATGAGGAAGGAAAAGGAGCGATTC    754
                     ||||| |||.||..|||||||.||.|||||.|||||||||||.|||||.|
RBAM_012840__    705 GCCGGCTGACCTTTTGTTTTTCGCCTATGAAGAAGGAAAAGGCGCGATCC    754

BSNT_02189___    755 ATCACGTCGGT------CTGTATGTAGGCGGCGGGAAAATGCTGCATTCT    798
                     |.||.||||||      |||   |.||.||||.|   |||||||||.||.
RBAM_012840__    755 ACCATGTCGGTTTGGCGCTG---GGAGACGGCCG---AATGCTGCACTCC    798

BSNT_02189___    799 CCAAAGACAGGAAAATCAATTGAAATCCTTACATTAAAAGACATAATCTA    848
                     ||.||.||.||||||.||||.|||.|.||..|.||..|||..|...||||
RBAM_012840__    799 CCGAAAACGGGAAAAACAATCGAAGTGCTGTCTTTGGAAGGAACCGTCTA    848

BSNT_02189___    849 TGAAAAAGAACTTTGTGCGGTGCGCCGCTGTTTTTCAGAATAA-------    891
                     ||||||||||.|.||..|.||.|||||||||        ||||       
RBAM_012840__    849 TGAAAAAGAATTATGCACCGTACGCCGCTGT--------ATAAGCGAAAA    890

BSNT_02189___    891 ----------    891
                               
RBAM_012840__    891 GGGGGAATAG    900


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